Oncorhynchus tshawytscha (Chinook salmon): 112250291
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Entry
112250291 CDS
T05605
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112250291
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112250291
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
ROBO family
112250291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
C2-set_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Unc5_NetrinR_N
Ig_PDGFR_d4
Fn3_Dep-1_3rd
Fn3_SaeA_3rd
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
112250291
NCBI-ProteinID:
XP_024276097
LinkDB
All DBs
Position
LG30:complement(11811706..11959330)
Genome browser
AA seq
1617 aa
AA seq
DB search
MMPARSVGIYFLLGFIHICSGSRLRQDDSPPRIVEHPSDLIVSKGEPATLNCKAEGRPAP
TVEWYKDGERVETDRDNPRSHRMLLPSGSLFFLRIVHGRRSKPDDGSYVCVARNYLGQAV
SHNASLEVAILRDDFRQNPADVIVAAGEPAVLECQPPRGHPEPTISWRKDGTNINDRDER
ITIRGGKLMITNARKSDAGKYICVGTNMVGERESEIAELTVLERPGFVKRPSSVMVLADE
SVEFHCEARGDPVPTVRWRKEDADLPKGRYEILEDHTLSVRGVAPSDEGSYTCVVENMVG
KAEASATLTVHVFTVPPAFAMRPRNQVVAVGRMVTFQCEATGNPQPAIFWQREGSNSLLF
SYQPPQPFSRLSVSQTGSLTIADAQRSDAGYYSCQALNIAGSVITKALLEVTDMVSDRPP
PVIRQGPANQTAPVDSTVVLGCIATGTPTPTVHWKKDGVVVSSDDSRITQIDTGALQIRY
TKLGDTGVYTCLASSPSGEASWRAYVEVQEFGVVVQPGRPTDPNLIPSAPSKPDVTDVSR
TSVTLSWKPNPNAGATPTSYVIEAFSHASGSSWVTLADHVRTETFVLKNLKPGAVYLFLV
RAANAYGLSDPSPITDAVRTQDTPPTSQGVDHRQIQRELGDVVVNLHNPTILSSSSVRVQ
WTVEQESPYIQGYKVMYRASADLGQPGGQWGVFEVRTPGEDGAVVPQLKKGVTYEFKVRP
FFDEFQGADSEVKVARTLEEAPSGAPRGVTVTKSDANGTAILVAWQPPSEEEQNGMVQEY
KIWCLGNESRYHVNRTVDGSTFSVLIPSLAPGIRYSVEVAASNGAGPGVKSDVTFFQLDS
TGQMMDSSEDQDTLSQISDVVKQPAFIAGIGATCWVVLMVFSVWLYRHRKKRSGLSSSYA
GIRKVPSFTFTPTVAYQRGGESVCSAGRPGLLNMGESVNQPWLADSWPNACANHKDCNIN
CCNSGNGTSDSNMTTYSRPADCIANYGSQLEKQQGVLLGPEQAVYSDVDLSNKLNELKTF
NNPSLCYVGPGGGPPTPYEPTPYATTQLIQSSILNKAAAAGAGAPDIRCWNQPPSHLQKT
QMQYNIMEQNNRLNKDHYRGDGPLQGTVPYNQAHEHSTGGSHHSSDRGSSSTSGSQSHKK
GTRTPKLPKTNTVNWGEPLPPPPANPPPSRSCDEYTLPMEKSFNPDAPCPMLTSRMYLHP
DEMEEEEQEAAEGMDRCPTPPVRGAASSPAGMSYSHQSTATLTPSPQGDQHNGLHNGTDH
HRQHAASPPPPPHPLSPPHTYGYISSPLALDTDGQEEEEEDEEGDETDAEMAQGHYHQHQ
NNPQPHQKQPHHQHHPPPRRLHLRGLEQTPASSTGDLESSVTGSMINGWGSASEEDNGSS
GRSSAVSSSDGSFFTDADFAQAVANTGDYTAGLRMARFPEDTGPAGRRSQRPSSPLSTDS
NMSSAVMQKRPPKRHKQHQAQAGHQGHQQRNDFTDDSCMPLKSPSHMSRCGYEVRGATLP
RIGSGEGRGRRGSAGGQRTREGSVERREAQDKNRTPQGGKGSNKGRQHPGSEDILPYSRP
SFPSVQGQSQGQSSSSSMSSRGSGGRRRDGARRNPTDTLPSIAGFQTQEEELELLES
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgcgcgttcagtgggaatttactttctactcggatttattcacatttgttca
ggatctcgtcttcgtcaggatgactcccctccccggatagtggagcacccctctgacctc
attgtgtccaagggggagccagccaccctcaactgcaaggcggaggggcgtcctgccccc
acggtggagtggtacaaggacggggagcgtgtggaaacagaccgggacaacccccgttcg
caccgcatgctgctgcccagcggctccctcttcttcctacgtatcgtccacggccgacgc
agcaagccagacgacggcagctacgtgtgtgtggcccgtaactacctgggccaggccgtc
agccacaacgcctcgctggaggtagccattctccgtgatgacttcagacagaacccagcg
gatgtgattgtggcagcgggcgagcctgccgtgctggagtgccaaccgccccgcgggcat
cctgagcccaccatctcatggaggaaagatggcaccaacatcaacgaccgggatgagcgc
atcacgatccgcggtgggaagctgatgatcaccaacgccaggaagagtgacgcagggaaa
tatatctgtgtggggaccaacatggtgggagagagggagagcgagattgccgaactgact
gtactagagcgcccagggtttgtgaagaggcccagtagtgttatggtgctggcagatgag
agtgtggagttccactgtgaggcgcggggagatccggtccccactgtccgctggaggaaa
gaggatgcagacctgcccaaggggaggtatgagatcctggaggaccacactctgagtgtg
cgtggtgtggcaccatcagacgagggctcctacacgtgtgttgtagagaacatggtggga
aaggcagaggcgtccgctacgctgaccgtacacgtcttcactgtgcccccagcgttcgcc
atgcgccccagaaatcaggtggtggcagttgggagaatggtcaccttccagtgtgaggcc
actggcaacccccagcctgccatcttctggcagagggagggcagcaatagcctgcttttc
tcctaccagccgcctcagcccttcagccgactttccgtgtcccagacaggcagtctgaca
atcgcagacgcccagcgctcagacgccggctactacagctgtcaggccctcaacatcgct
ggctctgtcatcaccaaggccctgctggaggtcactgacatggtgtcagaccgcccccct
cccgtaatccgacagggcccagccaatcagacggcacctgtggacagcacagtggtcctg
ggttgcatagcaacaggaacccccactccaaccgtccattggaagaaagacggggtggtg
gtgtcctccgatgactcccgcatcactcagatagacacaggagccctgcagatccgctac
actaagcttggagatacaggcgtatacacctgtttggcatccagccccagtggagaggca
tcctggagggcctacgtggaggtgcaagagtttggagtggttgtccagccgggtcgaccc
acagaccctaacctgatccccagtgccccgtccaagcctgacgtgactgacgtcagccgc
acctctgtcacactgtcttggaaacccaaccctaacgctggggccacgcccacctcctat
gtcattgaggcattcagtcacgcgtcggggagtagctgggtgactctggctgatcatgtg
aggacggagacctttgtcctgaagaacctcaaaccaggtgccgtctacctgttcctggtt
agagcagccaacgcctacggcctcagtgaccccagccccatcactgatgccgtcagaaca
caagacacccctcccaccagccaaggagtggaccaccgtcagatccagagggaactgggg
gacgtggtggtcaatctgcacaaccccaccatcctctcctcctcctccgtcagggtgcag
tggacggtggagcaggagtctccgtacatacagggctataaggtgatgtacagggcgtct
gctgatctgggccagccaggtgggcagtggggcgtgttcgaggtgcggacccctggagag
gacggtgctgtggtgcctcagctgaagaaaggggtcacctacgagttcaaagtgcgtccc
ttctttgatgaatttcagggagcggacagcgaggttaaggtggccaggacgctggaggaa
gcccccagcggagccccccggggcgttaccgtgacgaagagcgatgccaacgggaccgcc
atcctggtcgcctggcaaccaccttccgaagaggaacagaatggaatggtacaggagtac
aagatctggtgcctgggcaacgagagccgttaccacgtcaaccggacagtagatggctcc
accttctccgtgctgatccccagccttgcgccagggatacgctacagcgtggaggtcgcc
gctagcaacggcgccggccctggggtcaagagcgacgtcaccttctttcaacttgactct
acgggtcagatgatggacagctctgaggaccaggacacgctgtctcagatctcagacgtg
gtcaagcagccggcgttcatcgcaggcatcggtgccacctgctgggtggtcctcatggtg
ttcagtgtgtggctgtatcgtcaccgtaaaaagaggagcggcctcagcagcagctacgcc
ggcatacgcaaagttccatcattcactttcactcctacagtggcctatcagagaggagga
gagtctgtctgcagtgctgggagacctgggctgttgaacatgggggagagtgtaaaccag
ccgtggctggcagactcctggcccaacgcatgtgccaaccacaaagactgcaacatcaac
tgctgcaacagtggcaacggcaccagcgacagcaacatgactacctacagccgcccagcc
gactgcatcgccaactatggcagccagctggagaagcagcagggggttctgctggggccc
gagcaggctgtgtacagcgacgtggacctctccaacaaacttaacgagctcaagactttc
aacaaccccagcctgtgctacgtgggcccagggggagggccgcccaccccctacgagccc
accccctatgccaccacccagctcatccagtccagcatcctgaacaaggctgcagcagct
ggggccggggcccctgacatccgctgttggaaccagcccccctcccacctgcagaaaaca
cagatgcagtacaacatcatggagcagaacaacagacttaataaagaccactatagagga
gatgggcctctgcaaggcaccgtcccctataaccaggcccacgaacacagcacaggaggc
tcccaccacagttctgacaggggcagcagcagtacctctgggagccaaagtcataagaag
ggaactcgcactcccaaacttcccaaaactaacacagtgaactggggtgaacctctgccc
cctccccctgccaaccccccaccaagccggagctgtgatgagtataccctgcccatggaa
aaaagctttaacccagatgccccgtgcccaatgcttacctcacggatgtacctgcatccg
gatgagatggaggaggaagagcaggaggcggcggaggggatggataggtgtcccaccccc
cctgttaggggggcagcctcttcccctgcgggtatgtcctacagtcaccagtctacagcc
actctcaccccctccccccagggagatcagcacaacggcctacacaacggaacagaccac
cacagacaacacgcagccagcccacctcctcccccgcaccccctctcccccccacacacc
tacggctacatctccagccccctggcactggacactgacggccaggaggaagaggaggag
gatgaagaaggggatgagacggatgcagagatggcccagggtcactaccaccagcaccaa
aataacccccagccccaccagaaacagccccaccaccagcaccaccctcccccacgcagg
ctgcacctccgagggttggagcagacgccggcctccagcactggggacctggagagctct
gtgacgggctccatgatcaacggctggggctcggcctccgaggaggacaatggctcgtca
ggacgctccagtgctgtcagctcctcagacggatccttcttcacagacgcagacttcgcc
caggctgtggccaacactggagactacacagcaggcctacgcatggccaggttcccagag
gacacagggccagcagggcgaaggagccagcgtcccagcagccccctgtccacagacagc
aacatgagctctgcagtgatgcagaagagaccgcccaagaggcacaagcagcaccaggcc
caggctggccaccaaggccaccagcagaggaacgacttcactgacgactcgtgtatgccc
ttgaagtctcctagtcacatgtcgcggtgtggctatgaggtgaggggggccacactccct
aggattggctctggggagggacggggccggagagggagtgcagggggccagaggaccaga
gagggctctgtggagagacgggaggcgcaggacaagaacaggactccacagggaggcaaa
gggagcaacaaaggtcgtcaacacccaggttctgaagacatcctcccatacagcaggccc
tcgttcccctcggtgcagggccagagccagggtcagagctcctccagctccatgtcctcc
cggggctcagggggacggaggagagatggggcccgcaggaaccccacagacacactgccc
agcatcgcaggcttccagacccaggaagaggaactagagctgctggagagctga
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integrated database retrieval system
