Oncorhynchus tshawytscha (Chinook salmon): 112250347
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Entry
112250347 CDS
T05605
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112250347 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112250347 (trim54)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112250347 (trim54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-C3HC4_4
zf-C3HC4_3
zf-RING_2
zf-RING_6
Sina_RING
Prok-RING_4
COG2_C
CDC37_M
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
112250347
NCBI-ProteinID:
XP_024276187
LinkDB
All DBs
Position
LG05:complement(24314894..24342115)
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AA seq
360 aa
AA seq
DB search
MNFALGYKPGQLGESSTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQAAN
PLWQSRGSKSMSTRGRFRCPSCRHEAVLDHHGVYGLQRNLLVENIIDIYKQEESSRPLNH
TKVEQQQLMCEEHDEEKINIYCLSCETPTCSMCKVFGQHKDCEVAPLQNVYKRQKTELSD
GIAILVAGNDRIQALLSQMEETCRSIQENGRRQKQSLCDKFDGLYAILEERKKELVGMIS
RQQDDKLDYIRSLMRRHGDHLEGAVKLVETAIQSMEEPQMAVFLQSIKDIFKQISTTAKV
SSMECPEPGYESMAHFVINTANVADMLRTIDFNTVRASGFQEKDGEDGYDLGFSSQERTT
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgcactgggctacaaacctgggcaactcggggagtctagcaccatggataac
ttggagaagcagctcatctgccccatctgcctggagatgttcaccaagcctgtggtcata
ctgccctgccagcacaacctctgcaggaagtgtgccaatgacgtcttccaggctgccaac
cccctgtggcagtctcgggggtccaagtccatgtccacaaggggtcgtttccgctgccca
tcatgtcgtcatgaggcagtgttggaccaccatggtgtgtatggcctacagaggaacctg
ctagtagagaacatcatagacatctacaaacaagaagagtccagcaggcccctgaaccac
accaaggtggagcagcagcagctgatgtgtgaggagcatgacgaggagaagatcaacatc
tactgcctgagctgtgagacgcccacctgctcaatgtgtaaagtgtttggccagcacaag
gactgtgaggtggcccccctgcagaatgtctacaagagacagaagacggagctgagtgac
ggcatcgccatcttggtggctgggaacgaccgtatccaggccctcctctctcagatggag
gagacctgcaggtccatccaggagaacggccgtcgtcagaagcagagtctgtgtgataag
tttgacgggctgtatgccatcctggaggagaggaagaaggagttggtgggtatgatcagc
cgccagcaggatgacaagctggactacatccgctccctcatgcgtcgccacggagaccac
ctggagggagccgtcaagctggtggagacagccatccagtccatggaggaaccacagatg
gccgtgttcctacagagcatcaaggatatatttaaacagatcagcaccactgccaaggtg
tccagtatggaatgtccagagccgggctacgagagcatggcccattttgtcatcaacaca
gcaaatgtggcagacatgctgaggaccattgacttcaacacagttagggcctcaggtttc
caggaaaaggacggggaggatggttatgatctgggtttttccagtcaagaaaggactact
tag
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integrated database retrieval system
