Oncorhynchus tshawytscha (Chinook salmon): 112250445
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Entry
112250445 CDS
T05605
Name
(RefSeq) rho GTPase-activating protein SYDE2 isoform X1
KO
K20655
Rho GTPase-activating protein SYDE
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112250445
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho GTPase-activating proteins
112250445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGAP
C2
Motif
Other DBs
NCBI-GeneID:
112250445
NCBI-ProteinID:
XP_024276367
LinkDB
All DBs
Position
LG01:complement(38465270..38555472)
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AA seq
1798 aa
AA seq
DB search
MADPLRRTLLAKLRGKKSKNGTPVGGYGAAANGCREGKEKVSQNPNGQAHRVVMFAELHC
VADNIMRGNESYVNGIVENKVGSVWEQSTVGVVKTSVFPQEYEAPATMHINTSRGPGDNQ
GSGGSGFRSRVNEELLGVSLQIATQYGGHDRYEMGRIPNGYFSRQVQQEQIGKPHEQRKH
FGPIPRQYGAGDSIGFGGSSPNYNIIYHRRPGVVDREGVKLTGGHYPASKSNGTNVCFDA
YLKTRVSDGQADSCHQTVYNYKAENAQRSINYLKGKAKLHPGHNQILETNVTTNWMQMYP
LGALCGHHPTGSYTEENIVIRDIERYRSSPEFTGDNIRVTHLQSPTFFPTELEICDVNVA
SHFICAREGTLRNNSIDSEDNDYYDNEILPFYISESVGPSDRKGSDKVGSIESGIDVPKG
HVISDSVQETDRLHSQLKEAYYLLINAMHDISFDGQVSVNGFKDQKSMCSWSSFKHVGSD
ALSSGEYSAQQVSDMDSLPLCLLSENNTNLICKSLVNLSASRIRAPLLRSTSDGTIKHSS
GVHNGPCIQGLGSQSPLVVGACEDGDGANRPKAVGASDPFEKQTSYDGGASSDGLLQDTG
DNGKLNESRGSVNSLTGSSDNAEPQQGGNNNRDREMSGWTLDKGGSAKAHGVTVNKMQEW
MHKGRLLSSEMKQRIAGSTPQPHGAHGGLDRAPRPRQGQVSSGPGGSKPEALTTRFDRAK
PAAVVSCQGQATQKSALIENDHSSNGLDVDGGKAVETSLWRPPLNTITVSKKRNWLQQSS
GRPRHATDEPQYLLGAEEYNGHGKAPLPPLSPSPENLNPPGPTLSHPFHLHLPLVRMGHA
CVAPRSRCVEPTEENDADDEGEIWYNPIPEDEEPELHHSHRPTPTPQVRLMVQTRPQDPH
VPQTQRRPSRGEEVGVRRALEGCSPNLEGVGESMGCGGGERSQQGIAMRCMGPSLHLQRQ
MLLTCKPQEWPTISSRATATAEAPEMAIPDFPPPSGLNPAKKGSSLNWSFPDRIKSPRTV
RKLSMKMKKLPELSRKLSVKGTPSNNNSSCNGASESSILKTRTQCPKNNYGSEPGPAPPR
LSPRGGQGAVASHNVISRYHLDSSVSTQQSYSKMKSSGTSKSASKGGYLSDGDSPELVTK
SGKHGSSEAKGGNGKEKDPATGGGERTGAGGVTGGSGSPRLHGTELDIDAFRHYAFTEQP
KCTQYISGLMSLHFYGAEDLKPPRFDSRDVYCAIQVDSVNKARTALLTCRTTFLDMDHTF
NIELENAQHLKLVVFSWDPTPKKNRVCCYGTVVLPALFRVTRSHQLAVKLEPRGLIYVKL
NLMEQWQNSLDGGYNGDREPQMFGVEAWRVVVRENTGLMLPLLIEKCITEIETRGCQVVG
LYRLCGSAAVKKELREAFERDSLGVELCENTYPDINVITGVLKDYLRELPYPLITKHLYE
TVLDSMAQRPLRIGAGRCENDPADTEHTVSLLENLPEVERLTLRRLLDHLKLVASYHEVN
KMTCQNLAVCFGPVLLSQRQEASCHSNRVFIDSEELASALHFKKHIEVLHYLLQLWPVMD
PRDKNSSPIPGPPGPADQLAVPPLRRRKERPQVLTLSDAEMAGVLRPRPGRLDSPSNRYA
GDWSRCGQSYFPPRSREENDYADVPSEDMEVTEEELEGVEDKGQEGGEEQRQEWLLDRGQ
AEPATAEQEPPLPEEVMEGPVEVEKEEREAEEREAERRVEERDGSSGGQPSDNRVCDDKR
ILPLHLPKEHTYQAYMKIQDISPVLSNKVNLRDLQESIDTLIGNLERELNKNKLNVSY
NT seq
5397 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcctctgcggaggactttactagcaaaacttcgggggaagaaatccaagaat
gggacaccggttggtggatacggagctgcagctaatgggtgcagagaaggtaaagaaaaa
gtttctcaaaacccaaacggacaagctcatcgagtagtaatgttcgcagagttgcattgt
gtggcagacaatatcatgagaggcaacgagagttatgtgaatgggattgtagaaaacaag
gttggatcagtttgggagcagagcacggtaggagttgttaagactagtgtgtttccccag
gagtacgaggctccagctacaatgcacataaacactagccgggggccgggagacaatcag
ggcagcgggggctcggggtttaggagtcgagttaatgaagaactcttgggggtctcactt
caaatagcaacgcagtacggggggcacgataggtacgagatgggcagaatccctaacggc
tacttctcgagacaagtacaacaagaacagatcgggaaaccgcacgaacagagaaaacac
tttggccccattccgcgacagtacggcgcaggggactccataggtttcggtggcagtagt
cctaattataacattatataccacagacggcctggtgttgtagatcgagagggagttaaa
ctgacaggtggccactatcctgcttcaaaaagtaatgggacaaatgtctgctttgacgca
tatctaaagactcgagtcagcgacgggcaggcagactcctgccatcaaactgtgtacaac
tacaaggcagagaacgcgcagaggtcaataaattatttaaaaggcaaggcaaaattgcat
cctggccacaaccaaatattggaaacaaacgttacaactaactggatgcaaatgtatccg
ctgggtgccctatgtggacatcatccgaccggtagttacacggaggaaaacattgttatt
agagacatcgagcgctaccggagctcgcctgaatttaccggggacaacattagggtgaca
catttgcagagccccacattcttccccactgaattggagatatgcgacgtaaacgtggct
tcccatttcatatgcgctagagagggaacactccgaaacaactctatagatagcgaggat
aacgattactatgataacgaaattctccccttttacatatcggagtcagtaggaccaagt
gacagaaagggctctgataaagtaggaagcatagagtcgggaatagatgttccaaaagga
catgtcatcagtgacagtgtgcaggagacagacagactacacagccagttgaaagaggca
tattacctacttataaacgccatgcatgatattagttttgatggtcaggtcagtgtcaat
ggatttaaagatcagaagagcatgtgctcgtggtcctccttcaagcacgtgggcagtgat
gctttgtcatctggagagtacagtgcccaacaggtgtctgacatggactcgctcccattg
tgcctgctgagtgaaaataacactaatttaatttgcaagagccttgtaaacctatctgct
agcaggattagggcccccttactgcgatccactagtgacggaactatcaaacactccagt
ggcgtgcacaatgggccctgtatccagggcctcggttcccaaagccctttggttgttggg
gcctgtgaggatggggatggagcaaataggccgaaggctgttggagcctctgacccattt
gagaaacagactagctacgatggtggcgcgagcagcgacggcctactccaagacaccggt
gacaatggcaagttaaatgagagtagaggctcggtcaacagccttaccgggtcgtccgac
aatgcagaaccccagcagggtggtaacaacaatcgggacagagagatgagcggttggact
ctggacaagggaggctctgccaaggcccacggtgtcaccgtcaacaagatgcaggagtgg
atgcacaaaggccgcctactgtcatctgagatgaagcagcgcatcgcagggtccacgccc
caaccccatggtgctcatggtggcctggatagggcaccacggcccagacagggccaggtc
agctcaggaccaggtggttctaaaccagaagccctgacgaccagatttgacagggctaaa
ccagccgcagtggtctcatgccagggccaggcaacacagaagtcagctctgatagaaaat
gaccactcctccaacggccttgatgtggacggtggcaaggctgtcgagacgtcgctatgg
agacccccgctcaacaccattaccgtctccaagaaacgtaactggctccagcagagctct
gggaggccgcgtcacgccacggacgaaccccagtaccttctgggagcagaggaatacaat
ggacacggaaaagctccactcccccctcttagcccctccccagagaacctaaaccctccc
gggccaaccttatcccacccattccacctacacctgcccctcgttagaatgggccacgcc
tgtgtggcgcctcgttccaggtgtgtggaaccgactgaggagaatgatgcggacgatgag
ggggagatctggtacaaccccatccctgaggatgaggaaccagagctgcatcacagccac
agacccactcccaccccccaggtcaggctgatggtccaaacacggccccaggatcctcac
gtcccccagacccagaggaggcccagcaggggagaggaggttggggtcaggcgggccctg
gagggatgcagccctaacctggagggtgtgggggagagcatgggttgcggaggtggagag
cggagtcagcaggggattgccatgcgttgcatggggccgtctctacatctgcaaagacag
atgctgctcacgtgcaaacctcaagagtggccaaccatttccagcagagccacagctaca
gcagaagcccctgaaatggccatccctgacttcccgccgccctcaggcctcaaccctgcc
aaaaagggaagctccctcaactggtcattcccggacaggatcaagtctccacgcactgtc
aggaaactctccatgaagatgaagaagcttccagaactcagccgcaagctcagcgtaaaa
gggacccctagcaacaacaacagcagctgcaacggagccagcgagagcagcatcttaaag
acaaggacccagtgtcccaaaaacaattacgggtcagaaccaggcccagctcctcccagg
ttgtccccaaggggtgggcagggggcggtggctagccataatgtgatctcgaggtatcac
ctggacagcagtgtgtcgacgcagcaaagctacagcaagatgaagagcagcgggacctcc
aagtcggctagcaaggggggctacctcagtgacggggactccccagaactggtgaccaag
tctgggaagcacgggtcctcagaggccaagggaggcaatgggaaggagaaagacccagcc
actggcggaggagagagaacaggagctggaggagtaacaggaggaagtggcagccccagg
ctgcatggcacagaactagacattgacgctttccgccactacgccttcacagaacagcct
aagtgcacccaatacatctcgggcctgatgagcctgcacttctacggcgccgaggacctc
aagccaccacgcttcgactcccgagacgtctactgtgccatccaggtggattcggtcaac
aaggcgcgcactgccctgctcacctgtcggaccaccttcctagacatggaccacaccttc
aacattgagctggagaacgcccagcacctgaaactagtggtgttcagctgggaccccaca
cccaagaagaaccgggtgtgctgttacggcacagtggtgttaccggcactcttcagggtg
accaggagtcatcagctggcggtgaagctggagcctcgaggcctgatctacgtgaagctg
aacctgatggagcagtggcagaactccctggatggaggctacaatggggaccgggagcca
cagatgtttggggtggaggcctggagggtggttgtgagggaaaatacaggactcatgctg
cccctgctcattgagaagtgcatcacggagatcgagacgagaggctgccaggttgtgggc
ctctaccgtctgtgtggctcagcagcagtaaagaaggagctgcgggaggcctttgagagg
gacagcctaggcgtggagctctgtgaaaacacctaccctgacatcaacgtcatcacaggt
gttctgaaggactacctgcgtgagttgccctacccccttatcactaagcacttgtatgag
actgtgttggactctatggctcagagacctctacgtatcggagcaggaagatgtgaaaat
gacccggcagacacagaacacaccgtcagtctcctggagaacctgccagaggtggagagg
ttgaccctgcggaggctgctggaccatctcaagctggtggcgtcataccacgaggtcaac
aagatgacgtgtcagaacctggcggtatgcttcggccccgtgctgctcagccaacgccag
gaggccagctgtcatagcaaccgggtcttcatcgactcggaggagctggccagcgcccta
cacttcaagaaacatattgaagtgctacactacctgctgcagctatggccagtgatggac
ccacgtgacaagaactcatcccccatcccagggccccccggcccagccgaccagctggcc
gttccccccctgcgtcggaggaaggagcgcccccaggtgctgaccttgagcgatgcagag
atggccggggtgctgcggcccaggccgggccgtctggacagccctagcaaccgttacgcc
ggggactggagccgctgtggacagagctacttcccccctcggtcccgggaggaaaatgac
tatgctgatgttccttctgaggatatggaggtcactgaagaggaactagagggggtagag
gacaagggacaggaaggaggagaggagcagagacaggaatggttactggacaggggacag
gcagagccagccacagccgaacaggagcccccgttacccgaggaggtgatggaaggacct
gtagaagtggagaaagaggagagggaagcagaggagagagaagcagagaggagagtggag
gagcgtgatggctccagtggtggtcagccatcagacaacagggtgtgtgatgataagcgc
atcctgcccctccacctccccaaagagcacacgtaccaggcctacatgaagatccaggac
atcagccccgtgctcagcaacaaggtcaacctgcgagacctgcaggagagcatcgacacg
cttataggcaacctggagagagaactcaacaagaacaagctcaacgtcagctactga
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integrated database retrieval system
