Oncorhynchus tshawytscha (Chinook salmon): 112250451
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Entry
112250451 CDS
T05605
Symbol
vipas39
Name
(RefSeq) spermatogenesis-defective protein 39 homolog
KO
K23287
VPS33B-interacting protein in polarity and apical restriction
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112250451 (vipas39)
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Others
Others
112250451 (vipas39)
BRITE hierarchy
SSDB
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Gene cluster
GFIT
Motif
Pfam:
Vps16_C
Motif
Other DBs
NCBI-GeneID:
112250451
NCBI-ProteinID:
XP_024276373
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All DBs
Position
LG05:29365582..29389048
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AA seq
492 aa
AA seq
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MIRGKPDEDDYWNSSKFKAFTFDDEDDDFTRLKESKRAVNSIRSLVEEEDEEDDVEKVSW
SGEPVGSISWSVKETESSIRSTGEVRDQSFPKIHTAPSLPKNSSGYSLSSLFKGKAKTGS
FQSFSESFGDPSIRNYAPELRKPKSEYKDYVSDWTPEETVKRMQQGKVYSLEKFRSLQDK
LLLLDEAVNAHDGNVITAVLIYLKKSLSKEILFRELITREIALRHYIHYLKEIGEQKLLV
ELFKSMDRTEDMALMQYRDHLNVRDENKKRDFLKNCLSFPFSPDDATHVQDHYTLLERQI
IIEANDKQVESSGQADIFKKYPRKASILNMPIITTLYYSCFYHYGESDGTFSSPANIRKT
FRISDKQFLLTCLGARAKLKAWFDVDALFTTKNWLGYTKKRSPIGFHRIVDILQKNNAPV
QVLQDYVNLVEDVEQKISLAQKYKCHDVIINTYRDLKDRQQLIVYRGKVERGSSEYRKIE
EILSNSQLRWKN
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgataaggggtaaaccagatgaggatgactactggaacagttcgaagttcaaagctttc
acatttgatgatgaagatgatgactttaccaggctaaaggaatcaaagcgggctgtgaac
agtatccgcagcctggtagaggaagaggatgaagaagatgatgtggagaaggtcagctgg
agtggagagcctgttggaagcatctcgtggtcggtcaaggagacagaatccagcattcgc
tccacaggagaggtgcgggaccagagcttccccaaaatccacactgccccttcgttgccc
aagaatagttctggctactccttaagctccttattcaaaggaaaggccaaaactgggagc
ttccagtccttctctgagtctttcggagatccatccatccgaaattatgccccggagctt
cggaagccgaaatctgaatacaaggactacgtcagtgactggacccctgaggagactgtg
aagaggatgcagcagggaaaggtctactctttggagaagttccgctccttacaggacaaa
ctgctgctattggacgaggctgtgaatgcacatgatggaaacgtcatcactgcggtttta
atatatttaaagaagtcattaagtaaagagattctcttccgggagttgataacaagagaa
atagctcttaggcattatatccactacctgaaggaaataggagaacagaagcttttggtg
gagcttttcaagtccatggacagaacagaagacatggcgctcatgcagtacagagatcac
ctcaatgtcagagacgagaacaagaagagggactttctgaagaactgcctcagtttcccc
ttctcaccagacgatgccactcacgttcaagaccactacacactcctggaaaggcagatt
atcatcgaggcgaacgacaaacaggtggagagtagcggccaggcggacatctttaagaaa
tacccgcggaaagcctccatcctcaacatgcccatcatcactactctctactactcctgc
ttctaccattatggggagtctgatggcacgttcagcagtcccgccaacatacggaagacc
ttcaggatttcagataaacagtttctcctcacatgtttgggtgcgagggcgaagctgaaa
gcctggttcgatgtggatgctctgttcaccaccaagaactggctgggctacaccaagaag
aggtctcccataggcttccatagaatagtggacatccttcagaaaaacaacgcaccagta
caggtgttgcaggattacgtcaacctggttgaagacgtggagcagaagatcagtttggcg
cagaagtataagtgtcacgacgtcatcatcaatacgtacagggacctgaaggaccggcag
cagttgattgtgtaccgggggaaggtggagagaggctcatccgagtacaggaagatcgag
gaaatcctcagcaactcgcaactccgatggaaaaactga
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