Oncorhynchus tshawytscha (Chinook salmon): 112250549
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Entry
112250549 CDS
T05605
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112250549
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112250549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_19
HrpB1_HrpK
Methyltransf_FA
Focal_AT
Motif
Other DBs
NCBI-GeneID:
112250549
NCBI-ProteinID:
XP_024276564
LinkDB
All DBs
Position
LG05:complement(35448372..35462724)
Genome browser
AA seq
811 aa
AA seq
DB search
MEDTDLHLSDEPMTGMLDTDSPESVESPAMEGNGEDFLPDLPVLTHAAEWTMDQDPHNLT
TVIHDSDSESDQSSPEVIEQHQVQQSDLGSVEQAVQHFQLASAELFQEERREHEDSDEQS
RSPQAEQQNQMEASSDESQDGHNTATEPLIQSEKLSDTGEQQQDPVQAQPPMVAEDSSPA
NMELEESKETEQVEPVEEPAVPTEPLIPSEYEKLAKGCEENPEDFNGWVYLLQYVEQENH
LGVVRKAFDAFFLRYPYCYGYWKKLADTEKKHGNAQVAEEVYRRGVHAIPLSVDLWLHYL
SFIKDNADPEDPETPSRIRAAYEHAVLAAGTDFRSDRLWEAYINWETEQERLANVTAIYD
RILGIPTQLYSQHLQRFKEHVQNNNPKHFLSEEEFVQLRVELAKANAVTVNEDGEEATPA
EPEGLPVGTEDLPDPAKRVTEIENMRHKVIESRQEVFNQNEQEVSKRWAFEEGIKRPYFH
VKALEKTQLSNWKEYLEFEIENGTPERVVVLFERCLIACALYEDFWMKYAKYLESYSIEG
VRHVYKKACTIHLSKKPNIHLLWAAFEEQQGNIEEARGILKSLEELVPGLAMVRLRRVSL
ERRHGNLEEAEALLSEAMASGKNASETSFYAVKLARQLLKVQRSLTKARKVLLETIDKDQ
TSPKLYLNLLELEYSGDVQQNEAEILACFDRALSSPLPLDCRLTFSQRKVEFLEDFGSDI
NKLVTAYDEHQKLLKEHESTKRKAENGSQEPESKRQRTDDHPGSGHMMQGDNSAYNYNWY
QQQYNNWGQHSWGQYNQYAQQYNQYYPPPPT
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggaagatactgacctgcacctctcagacgagcccatgacggggatgttggacacagac
agccctgagagtgtggagtccccagccatggagggcaacggagaggacttcctccctgac
ctgcctgtcctcacgcatgctgctgaatggaccatggatcaggatccccataacctcacc
acggttatccacgactcggactcagagtcagatcagtcgtcgccagaggtaatagagcag
caccaggtccagcagtctgatctaggatctgttgaacaggcagtgcagcacttccagcta
gcgagcgctgaactcttccaagaggagcgtcgggagcatgaggattcagatgagcagtct
cgttctccacaggcagaacaacagaaccaaatggaggcatcgtcagacgagagtcaggat
ggacacaacacagccacagagcctttgatacagagcgagaagttgtccgacactggagaa
cagcaacaagatccagtccaagcccagccaccaatggttgcagaagatagtagcccagct
aacatggaacttgaagaatccaaagagacagagcaggtggaacctgttgaggaaccagct
gtccctacagaacctcttatcccttctgagtatgagaagctggctaaagggtgtgaggaa
aaccctgaagacttcaatggttgggtctacctgctgcagtatgtggaacaagagaatcat
cttggtgtggtgaggaaggcgtttgatgcgtttttcttgcgctacccctactgctacggc
tactggaagaagttagctgacactgagaagaaacatggcaatgcacaggtggcagaggag
gtgtaccggcggggtgtgcatgccatccccctcagtgtggacctgtggctccactacctg
tccttcatcaaggacaatgctgaccctgaagacccagagacaccgtcacgcattagagct
gcgtatgagcatgctgtgttggcagcagggacagacttccgctctgaccgtctgtgggag
gcctacatcaactgggagacggagcaggagagattggccaacgtcacggccatctacgat
cgtatcctgggcatacccacccagctctactcacagcacctccagaggttcaaagagcat
gtgcagaacaacaaccccaaacacttcctgtcagaggaggagtttgtccagctcagggtg
gagctagccaaagccaatgcagtcacagtcaatgaggatggagaggaagcaacacccgcg
gagcctgaggggctcccagtcggcaccgaggacctcccagatcctgctaagagagtgacg
gagattgagaacatgcgccacaaggtgatcgagtcgcgtcaggaggtgttcaaccaaaac
gagcaggaggtcagcaagcgctgggccttcgaggaggggataaaacggccctacttccac
gttaaagccctggagaagacccagctcagcaactggaaggagtatctggaatttgagatc
gagaatggcactcccgaacgcgtggtcgttttgttcgaacgctgcctcatcgcctgtgct
ctctacgaggacttctggatgaagtacgcaaaatatctagagagctacagcattgaggga
gtgagacatgtgtacaagaaggcgtgtaccatccacctatccaagaagcccaacattcac
ctgctgtgggctgcgttcgaggagcagcaggggaacatagaggaggcgcgtggcatcctg
aagtctctggaggagttggtaccgggcctggccatggtgcgtctgcggcgggtcagcctg
gaacgtcgccacggcaacctggaggaggcagaggccctgctgagcgaggcgatggcatcg
gggaagaatgccagcgagacgtcattctacgccgtgaagctggcccggcagctgctgaag
gtacagaggagcctcaccaaggcccgcaaggtgttgctggaaaccatagacaaggaccag
acgagtcctaagctgtacctgaacctgctagagctggagtacagtggggacgtgcagcag
aatgaggctgaaatcttggcctgcttcgaccgcgccctgagcagcccgctgcccctcgac
tgccgcctcaccttctctcagcgcaaggtcgagttcctcgaggactttggcagcgacatc
aataagttagtgactgcatacgatgaacaccagaagcttctgaaagaacatgagtcgaca
aagaggaaagcagagaatggctcccaggagcccgagtcgaagagacagcgtacagacgac
cacccaggctcagggcacatgatgcagggagacaactctgcctacaactacaactggtac
caacaacagtacaataactggggacagcattcctggggacagtacaaccagtatgcccag
cagtataaccagtactacccccctccaccaacatga
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integrated database retrieval system
