KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112250729
Entry
112250729         CDS       T05605                                 
Name
(RefSeq) ubiquitin-60S ribosomal protein L40
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03010  Ribosome
otw04120  Ubiquitin mediated proteolysis
otw04137  Mitophagy - animal
otw04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    112250729
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    112250729
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    112250729
   04137 Mitophagy - animal
    112250729
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:otw03011]
    112250729
   04121 Ubiquitin system [BR:otw04121]
    112250729
Ribosome [BR:otw03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    112250729
  Archaea
    112250729
Ubiquitin system [BR:otw04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   112250729
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 TBK1_ULD Ubiquitin_5 zf-C4pol OTU1_UBXL Dsc3_N UBL_UBAC1
Other DBs
NCBI-GeneID: 112250729
NCBI-ProteinID: XP_024276885
UniProt: A0A8C8GZG5
LinkDB
Position
LG05:49062580..49064627
AA seq 128 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTSN
LRPKKKLK
NT seq 387 nt   +upstreamnt  +downstreamnt
atgcagatctttgtgaagacgttgacggggaaaaccatcacccttgaggttgagcccagc
gatactattgaaaatgtcaaggccaagatccaggataaggaaggtattcctcctgaccag
cagcgtctgatctttgctggaaaacagcttgaagatggtcgcaccttgtcagactacaac
atccagaaagagtccaccctgcatcttgtgctgcgtctgcgtggaggcatcattgagcca
tctctgagacagctggcccagaagtacaactgcgacaaaatgatctgccgcaagtgctat
gctcgcctccatcctcgtgctgtcaactgccgcaagaagaagtgtggacacaccagcaac
ctgcgccccaagaagaagctgaagtaa

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