Oncorhynchus tshawytscha (Chinook salmon): 112250828
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Entry
112250828 CDS
T05605
Symbol
si:ch73-63e15.2
Name
(RefSeq) protein strawberry notch homolog 2 isoform X1
KO
K26273
protein strawberry notch
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112250828 (si:ch73-63e15.2)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112250828 (si:ch73-63e15.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
Motif
Other DBs
NCBI-GeneID:
112250828
NCBI-ProteinID:
XP_024277068
LinkDB
All DBs
Position
LG05:complement(52091884..52195291)
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AA seq
1521 aa
AA seq
DB search
MPTLPSPSLAMDGENYLHPEGPQLDSSMFEVASSNMESSMYPSASWGSFSQQSVGYSAHC
PMQSGNQQYHLNDTMPDMHIDMFSHSGFHDDFPCLNLPRNGGFPQDLSCIDDLSNNSLFS
SPADSLSEYADAQDFIHADNLAHVPTLWDINTPAQSQLELNANRFQGLSSLEDISAIIST
PPLGGYQVQRTQTPAEEEEEEEETEELGHVDTYADYKPSKSTIGISHPDIVVETNTLSSV
PPPDITYTLSIPNLTINCGLLSALQLEAIIYACQQHEVILQNNQRAGFLIGDGAGVGKGR
TVAGIILENYLKGRKKALWFSVSNDLKYDAERDLKDINAPTIPVHALNKIKYGDTATSEG
VLFATYSALIGESQAGGQRRTRLKQILDWCKPGFDGVIVFDECHKAKNATSTKMGKAVLD
LQHKLPLARVVYASATGASEPKNMIYMSRLGIWGDGTPFKTFDDFLHAIEKRGVGAMEIV
AMDMKVSGMYIARQLSFSGVSFRIEEISLDDDFKLVYNKSAKLWAETLAVFMRAADELCL
VSRKSLWGQFWSSHQRFFKYLCIAAKVRCLVELANKELEAGKCIVIGLQSTGEARTREVL
DENDGHLDRFVSAAEGVFKALVQKHFPSEKPRREKAPGNKRKRKPRGRQPKFPKHTMVDP
GGVINISDDSSTDTDGMDTDSNSSPDSLLDNNNDDDVIFVDTRIEEMKQDLLNKIADLGK
ELPLNTLDELIDKLGGPEKVSEMTGRKGRVVRRPDGSVRYESRAEQSHTIDHINLKEKDR
FMCGEKLVAIISEAASSGISLQADKRVKNQCRRVHMTLELPWSADRAIQQFGRTHRSNQV
TAPEYIFLISELAGERRFASIVAKRLESLGALTHGDRRATESRDLSKYNFENKYGTKALD
KITKAILGHIESKVSPPKGYPGGDSLFFRDMKHGMMDVGIFCKEPRFGLSTEKDCSITKF
LNRILGLEVHKQNSLFQYFTDNFDYLIEKDKKEGKYDMGILDLAPGNDEIYEEKQETFMT
VGNPQDGQVVLYKISVDRGMPWEEAYEKAQNLNSPDEGFYLSYKLRGNHPCVLLAEQGRG
RNFIVYKPNIGKQAHPESLDNLQQRYRKVTPDQAKDSWESQFNFSFGKCSHANWNGKCKK
IEEGQECLQGMRLRQYHMLCGALLRVWKRVADVVSDITSSSILQIVRLKTKNSNKQVGIK
IPENCVARVRVELLKMDEEVKRRRKEREQHAQEQRLAEQRQLQEIHLLAKPYSQPHSQSH
RTQNFYQSLIQAKPLQVKPLLQPKPQPSPINQLPSMASIFSHFPHHFPSLPPMQPAPTST
TKPFRVGEEVLDLTVSSSPSPDSTEGVLGLISLTGGSDFDLERLISRHALAAQNTAHILQ
QPLQPPLIKQRQLQSPQQIQPQLQQWSDQPLINSAHQDYYILDHPDSLPYSLSSQTATNP
STSSTSSSSSNTVAHVSSPSTPSHFSSSTLAPSEQQPLPLANSHCSTDTLINAREVLDNM
MRTSADRQSVIQYQPNEWDSA
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgcccacactcccgtcaccctcactggccatggacggggagaactacctgcacccagag
gggccgcagctggacagcagcatgttcgaagtggcctcttccaatatggagagttctatg
tatccttctgcttcctggggatcattctcacagcagtctgtaggctacagcgcacactgc
cctatgcaatctggaaaccagcaataccacttgaatgacaccatgccggatatgcacatc
gacatgttcagccattctgggttccatgacgatttcccctgcctcaacctccccagaaac
ggaggcttccctcaggacctgtcctgcatcgatgacctctccaacaactctctgttctcc
tctccggccgactctctgtcagagtacgccgatgcccaggacttcatccacgcagacaac
ctggcccacgtgcctacgctatgggacataaacacaccagcacaaagccagctggagcta
aatgccaacaggtttcagggtttgagcagtttggaggatatctctgccattatcagcacc
ccacctttgggaggataccaggttcagagaacccagactccggcagaagaggaggaggag
gaggaggagacagaggagctgggacatgtagacacctacgccgactacaaaccatccaaa
tctaccatagggatctcccacccagacatagtggtggagaccaacacgctgtccagcgtc
cctcctcctgacatcacctacactctatccattcctaacctcaccatcaactgtggcctg
ctctctgccctgcaactcgaggccatcatctacgcctgccagcaacatgaggtgatcctg
cagaacaaccagagagcaggcttcctgataggagacggggccggagtggggaagggccgt
acggtggccggcatcatcctggagaattaccttaaaggaaggaagaaagcactatggttc
agtgtgtccaatgacctgaaatacgacgcagagagagatctcaaagacataaatgctccc
actattcctgtgcatgccttaaacaagataaagtatggcgacacagctacctcagaagga
gtcctgtttgcgacatactctgctctgattggtgagagtcaagcaggagggcagcgccgc
accagactcaagcagatcctggactggtgcaagcccggctttgacggcgtcattgtgttt
gacgaatgccacaaggccaagaatgccacgtccaccaagatgggcaaggccgtgctggat
ctgcagcacaagctgcccctggccagggtggtttatgccagtgccacaggtgcctctgag
ccaaagaacatgatttatatgagccgcctggggatctggggcgacggcacgcctttcaag
acctttgatgatttcctgcacgccatcgagaagaggggtgtaggcgccatggagattgtt
gcaatggacatgaaggtgagtgggatgtacatcgcccggcagctgagcttctcaggggtg
tccttccgcattgaggaaatcagcctggacgatgacttcaaactggtctacaacaaatct
gccaaactgtgggcggagactctggctgtgttcatgcgtgcagcagatgagctgtgcttg
gtcagcaggaagtccctgtggggtcagttctggtcttctcaccagcgcttcttcaaatac
ctctgcatcgccgccaaggtccgctgcctggtggagctggccaataaggagctggaggct
ggcaagtgcattgtgattggtctgcagtctacaggagaggcccgaaccagagaggtcctg
gatgagaacgatgggcacctggacagattcgtatctgcagcagagggggtgttcaaagct
ctggtacagaaacactttccctctgagaagccgaggagagagaaagcgcctggaaacaag
agaaaacgtaagcccaggggccggcagcccaagttcccaaagcacaccatggtggatccg
gggggtgtaatcaacatcagtgacgacagcagcacggacacggacggcatggacaccgac
tccaactcctcacccgactccctgctggacaacaacaacgacgacgacgtcatcttcgtt
gacaccaggatagaggagatgaaacaggacctcctgaacaagatcgctgacctggggaag
gagctacctctgaacactctggatgaactcatcgacaagttgggaggtccagagaaagtc
tcggagatgactggtcgtaaggggcgtgtggtgcgacggcctgacgggagcgtgcgctac
gagtcgcgtgcggagcagagccataccatcgaccacatcaaccttaaggagaaggaccgc
ttcatgtgtggagagaagctggtggccatcatctcagaggcggccagctcgggcatctcc
ctgcaggcagacaagcgggtgaagaaccagtgtcggagggtccacatgacgctggagctg
ccctggagtgcagacagagccattcagcagtttggtcgtacccatcgctccaaccaggtg
acggctccagagtacatcttcctcatctctgagctggccggggagagacgctttgcctcc
atcgtggccaagagactggagagcctgggtgcattgacccacggtgacaggagagccaca
gagtccagagacctgagcaaatacaactttgaaaacaagtatggtaccaaggctctagat
aagatcaccaaagccatcctgggtcacattgagagcaaggtgtcccctcccaaaggctac
cccgggggcgattccctgttcttcagagacatgaagcatggcatgatggacgtgggcatc
ttctgcaaggagcctcgctttggtctcagtactgagaaagactgcagcatcaccaagttc
ctcaacaggatcctgggcttggaggtccacaagcagaactctctgttccagtacttcact
gacaactttgactacctgatcgaaaaggacaagaaggagggcaaatacgacatgggcatc
ttagatctggccccaggtaacgatgaaatctatgaggagaaacaggaaaccttcatgaca
gtgggtaacccccaggacggacaggttgtgctctacaagatcagcgtggatagagggatg
ccctgggaggaggcctacgagaaggcccagaacctcaacagtcctgacgaaggcttctac
ctctcctacaagttgcgggggaaccacccttgtgtgctgctggcggagcagggccgaggg
aggaacttcatcgtctacaagcccaacatcggcaagcaggcccaccctgagagcctggac
aacctgcagcaacgctaccgcaaggtgaccccagaccaagccaaggacagctgggagagc
cagttcaatttctcctttgggaaatgtagccatgctaactggaacgggaagtgtaagaag
attgaggagggacaggagtgtctgcagggtatgcgtctgcgccagtaccacatgctgtgc
ggggcgctgctgcgtgtctggaagcgcgtggctgacgtggtctctgacatcaccagctcc
agcatcctgcagatcgtacgcctcaaaaccaaaaatagtaacaagcaagtcggtatcaag
atcccagaaaactgcgtggcccgtgtgcgagtggagcttctcaaaatggatgaggaggta
aagaggaggcgcaaggagagggagcagcatgcccaggagcagaggctagccgagcagcgg
cagcttcaggaaatacacctgcttgccaagccctacagccagccccacagccagagccat
aggactcagaacttctaccagagcctgatccaggccaagcctttacaggtcaagcctcta
ctacagcccaaaccccagcccagcccgatcaaccagctccccagcatggccagcatcttc
tcccacttcccccaccacttcccctccctgcccccaatgcagcccgctccaacctccacc
accaagcccttccgggttggggaggaggtcctggacctgacggtgagctcctctccctcc
ccagacagcacggagggagtcctgggcctgatcagcctgacagggggctccgactttgac
ctggagagactgatatcgcggcacgcactcgccgcccagaacacagcacacattctgcag
caacctctacagccaccgctgatcaaacagcggcagctacagtcgccacagcagatacaa
ccacagctacagcagtggtcagatcagcctttaatcaacagcgcccaccaggactactat
atccttgaccatccagactctctgccttactctctgtccagccagacagctactaacccc
tccacctcttctacctcctcctcttcctccaacacagtggctcacgtctcgtccccctcc
accccctctcacttctcctcctcgacccttgccccctcagaacagcagcccctccctcta
gccaacagccactgcagcacggacacactcatcaacgcgcgcgaggtcctggacaacatg
atgcggaccagtgcggaccgccagtcggttatccagtaccagccgaacgaatgggactct
gcgtaa
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integrated database retrieval system
