Oncorhynchus tshawytscha (Chinook salmon): 112250855
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Entry
112250855 CDS
T05605
Name
(RefSeq) DNA-directed RNA polymerase, mitochondrial
KO
K10908
DNA-directed RNA polymerase, mitochondrial [EC:
2.7.7.6
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
otw03029
]
112250855
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112250855
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Mitochondrial RNA polymerase
112250855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol
RPOL_N
PPR_2
PPR_3
Motif
Other DBs
NCBI-GeneID:
112250855
NCBI-ProteinID:
XP_024277109
LinkDB
All DBs
Position
LG05:complement(53419852..53514462)
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AA seq
1339 aa
AA seq
DB search
MSLLRLCTFPKCLSGRILLEISVRRVPYVDHCLTIRNNIERHISEPPWTSQRRHFSALIP
KKEDGKKRVWEQSQLLDVLEARIQQLQSDVIVDVQHEKVQFVKASKAGIGDSSGNSPKNV
FGERPEVPKAGQTISKGGGQTGKGEGKDASASKSRWMEKLSQEKKTKTKKLKQKLGLEDK
PVKSSKGKLMLPGTSHKTISTKAGIKTASTVKKSKSLKNQEHTMAASKHKHTMAAAPVAA
ANVPIRKAKGKGKASKEPAPELSEARNRAEEMERKAEAKARELAEVEELERKLNQWAVSA
RPELVQDNSEARVYGDVQRSVRCYLEACVFCGDIDRAHRFLLSHHRMVSRRNLLNIGLYN
IMMRVWAKKGSLNQIGRMFILIEEAGLKPNLGSYCAALECMGRNPDCSPHLINRVLRQME
EDGLPVDELFSHCVFRQDERDMVLRAIHTVQPDFQSSINTILQTCSSPLVKDFYTERADA
KYPKMAFSLEELQERFSRQLSIEQASTITIHSVEAMKPVTSHMAKMRDLLAVQRLVWHKA
LVGALREGKIILASSTQKAVRLSLYPYLCLLDEKDYVDIMIQSLSNLPPSGESLHILAKE
LGNRVHNMFCIRMKGHNQMVDKLSHIYNEYTELLAKDSKEFDVLPRERWWKLEAEHSSGP
SLLGDETHWPHMVVVELGTYLVDLMVKHMKVNSDLLNSAYDRKLIPVLYHMYTFRSNKQV
GFIKPHPILTQMQQDAMDTTLTFDSYVMPMLCPPVPWTSAKFGAYLLTPTKMMRAVEGAN
QHEILLEKCQDADLHAVLDSLNQLGNAAWRINQPLLDIIISIFNDKGSEKLDVPPPNSEA
PKIPRYNQQDSATFTSAEKAHLKREVVNAKKKCSEMHSLRMDALYKLSIANHMRDEVFWF
PHNMDFRGRTYPCPPYFNHLGSDVTRAVLVFAEGKPLGPGGLEWLKIHLVNLTGLKKRSS
LAGRLEYANSIMDDILDSADNPLIGKKWWQNADEPWQTLACCMEIANAVRSPDPTHFISH
FPVHQDGSCNGLQHYAALGRDVIGATSVNLIPCEVPQDVYSGVAQQVEEFRVRDAEKGLK
IAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKEIDDFPKEYVWDASHYLVHQV
FSSLKEMFTGTREIQDWLTESARLISKSGSTVEWVTPLGLPIIQPYHRSRTQMLKATIQY
LSFQITHDSKERPDTVKQKNAFPPNFIHSLDSTHMMLTALYCYSAGLTFVSVHDCFWTHA
ITVDTMNKVCREQFVALHSQPILQELSNFLLKKYCSGLQSEVKSKKFLEYQRMLLLLAKV
PQTGNFDLQRVKESTYFFS
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttttgagactctgtacctttccaaagtgtctgagtggtcgcatactgttggaa
ataagtgttcgtcgcgtgccatatgttgaccattgccttacaatccggaataacattgaa
aggcacatttcagagccaccatggacatcacaacgaagacatttctcagctctgatccca
aagaaagaagatgggaaaaaacgagtatgggaacaatctcagctgctggatgtgctcgaa
gccaggatccagcaactccaatctgacgtcattgtagatgtccaacatgaaaaggtgcaa
tttgttaaagcttccaaggcagggataggggattcttcagggaacagtcccaagaatgtg
tttggggagaggcctgaggtgcccaaggcgggacagactattagtaagggagggggacag
actggtaaaggagagggcaaagatgcatcagcctccaaatcccgctggatggagaaactg
agccaggagaagaagactaaaacaaagaaactgaagcagaagctaggcctagaggataaa
cctgtgaaaagcagcaaaggcaaactgatgctaccaggtacctcacataaaaccatatcg
acaaaagcaggaataaagactgcatcaactgttaaaaagagtaaaagtctgaaaaaccaa
gagcacaccatggcagcttcaaagcacaagcacactatggcagctgcaccggttgctgct
gctaatgtgcctattagaaaagccaaagggaagggtaaagcctcgaaggagccggctcct
gagttgtcggaggccaggaacagggccgaggagatggagaggaaggctgaggccaaggcc
cgggagctggcagaggtggaggagctggagaggaagctgaaccagtgggctgtgtcagcc
agacctgagcttgtgcaggataacagcgaggccagggtgtacggcgacgtccagcgcagt
gtgcggtgctacctggaggcctgtgtgttctgtggggacatcgacagagctcaccgcttt
ctgctcagccaccaccgtatggtcagccgacgcaacctgctcaacataggactctacaac
atcatgatgagggtctgggccaagaagggctctttaaaccagattggccgtatgttcatt
ctgatagaagaggctggtctgaagcctaaccttggctcttactgtgctgctctggagtgt
atgggtcgaaaccctgactgttccccacatctcatcaacagggtcttgcgtcagatggag
gaggatggcctgcctgtggacgagctgttcagtcactgtgtgttcaggcaggatgagagg
gacatggtgctcagagccatccacaccgtgcaaccagacttccagtccagcatcaacact
atcctgcaaacctgctcctcaccactagtcaaagacttctacacagagagggcagatgct
aaataccccaagatggccttcagcctggaggagctgcaggagaggttcagccgtcagctg
agcatcgagcaggccagcaccatcaccattcactctgtggaggccatgaagcctgtcacc
tcacacatggccaagatgcgggaccttctggcagtgcagcggttagtgtggcacaaagcc
ctggttggggccctgagggagggcaagataatcttggccagcagcacccagaaagccgtc
agactcagcctctacccctacctctgtctgctggatgaaaaggactatgtagacatcatg
atccagagtctgtccaacctgcctcccagtggggagtctctccacatcctggccaaggag
ctaggcaaccgggttcacaacatgttctgcatccgcatgaagggacacaatcagatggtg
gacaagcttagtcatatctacaatgaatatactgagctactggccaaagactctaaggag
tttgacgtattgcctagggagcgatggtggaagctggaggcggagcatagctctggtccc
tccctgctgggggacgagacccactggcctcacatggtggtggtggagctgggtacctac
ctggtggacctcatggtcaagcacatgaaagtgaacagcgacctcctcaactctgcctac
gaccgaaagctcatccctgtgctctaccacatgtacaccttccgcagtaacaaacaggtc
ggcttcatcaagccgcaccccatcctgacgcagatgcagcaggatgccatggacaccacg
ctgacctttgactcctacgtgatgcccatgctgtgcccgcccgtgccctggacctcggct
aaattcggtgcttacctcctcacccccaccaaaatgatgcgcgcggtggaaggcgccaac
cagcatgagatcctgctggagaagtgccaggatgctgacctccatgccgtgctggactcc
ctcaaccagctgggcaatgcagcctggaggatcaaccagcccctgctggacatcatcatc
tccatcttcaatgacaagggtagcgagaagctggacgttccgccgcccaactctgaggct
cctaagattccccgctacaaccagcaggactcagccaccttcacctcagccgagaaggcc
cacctgaagagggaggtggttaatgctaagaagaagtgcagtgagatgcacagcctcagg
atggacgccctctataaactctccatcgccaaccacatgagggacgaggtcttctggttc
ccccacaacatggacttccgcgggcgcacctacccatgcccaccctacttcaaccaccta
ggcagcgatgtgaccagggctgtcctggtgtttgcggaggggaagcccttagggccgggc
gggctggaatggctgaagatccacctggtcaacctgacaggcttgaagaaacgcagctcg
ctggcaggcaggttggagtacgccaactccatcatggatgacatcctggactctgcagac
aaccccctcatcggtaagaagtggtggcagaatgcagatgaaccctggcaaaccctggcc
tgctgtatggagatagccaacgccgtcaggtcacctgaccccacacacttcatctcccac
tttcctgtacatcaggatggctcgtgtaacggcctgcagcactatgcagccctgggtcga
gacgtgattggtgccacctctgtgaacctcattccctgtgaggtgccccaggatgtctac
agcggggtggcacagcaggtggaggagttccgtgtgcgggatgctgagaagggtctgaag
atcgcccaggtgctggagggcttcatcagcaggaaggtggtgaagcagacggtgatgacg
gtggtgtacggggtgacgcgctacggaggacgcctccagatagagaagaggctcaaggag
attgatgacttccccaaggagtatgtatgggatgcctctcactacctggtccaccaggtg
ttcagcagtctgaaggagatgttcaccggcactagagagatccaggactggctgacggag
agcgccaggctcatctctaagtcgggcagcacggtagagtgggtgacacccctgggcctt
cccatcatccagccctaccaccgcagccggacacagatgctgaaggccaccatccagtac
ctgagtttccagatcacccacgactctaaagagagaccagacactgtgaaacagaagaat
gccttccctcctaacttcatccactctctggactccacacacatgatgctgactgctctc
tactgctacagcgccggcctgacgttcgtctccgtacacgactgcttctggacccacgcc
atcacagtcgacaccatgaacaaggtttgccgggagcagtttgtggcactgcacagccag
cccatccttcaagagctgtccaacttcctactgaagaaatactgttctgggctacagagc
gaggtcaaaagcaaaaagtttctggagtaccagagaatgctgctgctgctggccaaagtg
ccccaaacaggcaactttgatctccagcgggtaaaggaatccacttacttcttcagctga
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