Oncorhynchus tshawytscha (Chinook salmon): 112250870
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Entry
112250870 CDS
T05605
Symbol
si:dkey-110c1.10
Name
(RefSeq) unconventional myosin-Vb
KO
K10357
myosin V
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
112250870 (si:dkey-110c1.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112250870 (si:dkey-110c1.10)
04131 Membrane trafficking [BR:
otw04131
]
112250870 (si:dkey-110c1.10)
03029 Mitochondrial biogenesis [BR:
otw03029
]
112250870 (si:dkey-110c1.10)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112250870 (si:dkey-110c1.10)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
112250870 (si:dkey-110c1.10)
mRNA cycle factors
P-body specific factors
112250870 (si:dkey-110c1.10)
Membrane trafficking [BR:
otw04131
]
Others
Actin-binding proteins
Myosins
112250870 (si:dkey-110c1.10)
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
112250870 (si:dkey-110c1.10)
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
112250870 (si:dkey-110c1.10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
112250870
NCBI-ProteinID:
XP_024277133
LinkDB
All DBs
Position
LG05:complement(54216183..54240846)
Genome browser
AA seq
1684 aa
AA seq
DB search
MEKIMIGTMELYAKGASVWVPDPEAVWVSAKLLKDYNLGDENVVLQISDGREVQYPVAPP
SGLPPLANPDILEGENDLTALSFLHEPAVLHNLRVRFLDYSSIYTYCGIVLVALNPYDQL
PIYGEEVIDAYSGQDMADMEPHIFSVAEEAYRTMTREEKNQSIIISGESGAGKTVSAKFT
MRYFAVVGGAAQQTSVEERVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFGRKGDIIG
ANMRTYLLEKSRVVFQASQERNYHIFYQLCASRDLPEMRVLKLGGAETFRYTNQGGEDSM
QIPGTDDVVDLERTRNAFTILGVPPDQQMELFRILAAVLHLGNVNIQASGRGGDRSYIDG
EERSLSVFSKLLGVERTQMAHWLCHRRLTVGGEMLVKPMPGQQSLEARDALAKHVYGQLF
TWTVTRLNSALRAQSEKPKSFIGVLDIYGFETFERNSFEQFCINYANEKLQQQFNRHVFQ
LEQEEYVREELPWSRIEFSDNQPCIALIEGQLGLLDLLDEECRMPKGSEESWARKLYDQH
QSNNPSPHFRKPRMSNTAFIILHFADMVQYECDGFLDKNRDTVFEEPINILRASQSELVS
ELFQQKPVGGSLSLSEGKSSLPNGSLRSGPGMRAQREHKLTVGFQFRQSLQLLMDTLNST
TPHYIRCIKPNDLKEPFMFDPKRAVQQLRACGVLETIRISAAGYPSRWTYAEFFSRYRVL
LRGGGVQTQEQIQASCQRALPELIPDPEQYCFGKTKVFFRAGQVALLERLRAERLRAAGV
IIQSWVRGWLGRRRYIKTRWATLTIQRYTRGALARRLADLLRYTKAALIIQKTYRMVAIR
QMFLMIREATVTIQAFTRGSLARRQYRRVVAERAAVLLQSAVRGWLARLAYRRVRAAIVL
MQCCVRRRAARRELLKLKAEARSVEKFRELNKGMEVKLMQLQLRADQKARESGALRETLQ
AERKAHNTELDTLRGALVKLEYQLETQLQTQQSQPSTAITDEETEERRRAEEKAAQEILR
LTQEVQVLRVERDCLGKEKEDLTTRLLEQETAQEESVVQAVAQEGKALTAELDEERRKYQ
GLLREFTRLEQRYENLREMSMLTEHSKGYRRTDSNQSLIMEPPSPSPMSPPFSGPPTFPA
TPSFFGLPPFPSPEEVRRVSVTSPTAERRAWLSSDTLMDTLMENMGVAKDSAGKMTGEDL
WHAYDAVRVANKFLENQLRSQRSQEEAELEAKRTCSDPSPSADQQYLVELVEAREQEVCR
LRRELKELRHTVTLRRLLAQTGPVLSQSTEDSSAPHAKAGTVTGLLECRKRDEAKLMKTL
ITDVRVDSALSLPPGLAASVLFLCVRQADCSGDQIRARSLCTAAVTAMKGALKKHCNDVD
MTALWLKNACLLNDLLTQHSKQDEDLVPLTSDLSELNRALSALCIQAYQQLLSISETRLQ
PIIVPAMLESEMIPGLSGSGVKLGNFRKRAGSDPRAVERNAGETPSMAAVLRELGALHTA
LSRQALPPTLMEQAFRQLTHLLSASALNSLLLRKDMCSWSRGLQIRYNVSLLEEWLRTRG
LQAGGAVALLEPLIQAAQLLQVGKKTDADAQALVHTCTALSTQQIVKILTLYTPHSDLEE
RVTLNFIRTVQALLKERSGGQPPQLLMDVRRVFPVTFPYLPPPPVRADQLDIPDSLKISF
LRRP
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagattatgattggaactatggagttgtacgccaagggtgccagtgtgtgggta
cctgacccagaggcagtgtgggtatcagccaagctcctcaaggactacaaccttggagat
gagaatgtggtgctgcagatcagcgatggcagggaggtgcagtacccagtggcgccaccc
tctggcctcccccctctggcgaaccctgatattctggagggggagaatgacctcactgct
ctcagcttcctgcacgagcctgctgttctacacaacctgagagtccgattcctggactac
agcagcatttacacctactgtgggattgtgttggtggccctcaacccatatgaccagctg
cccatctatggagaggaagtgatcgatgcctacagtgggcaggacatggctgacatggag
cctcacatcttctctgtggcagaagaggcctaccgcaccatgaccagggaggagaagaac
cagtccattataatcagtggggaatctggagcagggaaaacagtctctgctaagttcacc
atgcgctactttgctgtggtggggggagcagcccagcagaccagtgtggaggagagagta
ctggcctctaaccccatcatggagtccattgggaatgctaagactacacgcaatgacaac
agtagccgatttgggaagtacattgagatcggcttcggacggaagggggacatcattggg
gccaacatgaggacgtacctgctggagaagtctcgagtcgtctttcaggcgtcacaggag
agaaactaccacatcttctaccagctgtgtgcttctagagacctgccagagatgagagtc
ctcaaactgggtggtgcggaaacgttccgctacacgaaccaaggaggggaagattccatg
cagatcccaggcactgatgatgtagtagatctggagcgcactcgcaatgctttcaccatt
ctaggtgtgcctccggaccagcagatggagctcttcaggatccttgcagctgttctgcac
ctgggcaatgtcaacatccaggccagtgggagaggtggtgatcgaagttacattgatggg
gaggagcgttccctgtcggtgttctccaagctgctgggggtggagaggacccagatggcc
cactggctgtgccaccgcaggctgacagtagggggagagatgctggtcaagcccatgcct
ggtcagcagtccctagaggcccgggatgccctggccaagcatgtgtacggtcagctgttc
acctggacagtgacccggctcaactcagcccttcgagcccagagcgagaagcccaagtca
tttattggggtgctggacatctatgggtttgagacgtttgaaaggaacagttttgaacag
ttctgtataaattatgccaatgagaaattgcagcagcaattcaacaggcacgtgttccag
ttggagcaggaggagtatgtccgtgaggagctgccgtggagcaggatagagttcagtgat
aaccagccgtgcatcgctctcatcgagggacagctgggcctgctcgacctgctggatgag
gagtgcaggatgcccaaaggttcagaggagagctgggctaggaagctgtatgatcagcat
cagagtaacaaccccagtccacacttccgcaaaccccgaatgtccaacactgccttcatc
atcctgcactttgctgacatggtccaatatgaatgtgatgggtttttagacaagaaccgg
gatacagtttttgaggaacccatcaacatcctaagagccagtcagtctgagctggtgtct
gagctgttccagcagaagccagtagggggcagtctgtccctctcagaggggaagtcctct
ctgcccaatggcagtctgcgctctggccctgggatgagagctcagcgggaacacaaactc
actgtgggcttccagttccgtcagtctctgcagctgctgatggacactctgaacagcacc
acccctcactacatccgctgtattaagcccaatgacctcaaagagccttttatgtttgac
cctaaaagggccgtccagcagctgcgagcctgtggggtgctagagaccatacgcatcagt
gctgcaggctacccatccaggtggacctatgcagagttcttcagccggtaccgggtgcta
ctgcgcgggggtggggttcagactcaggaacagatccaggcgtcgtgccagagggccctg
ccggagctcattccagacccggaacagtattgctttgggaagaccaaggtgttcttccgt
gctgggcaggtggctctgctggagaggctgagggcagagagactgagggcggccggggtg
atcatccagagctgggtcagaggctggctgggccgcaggcgatacatcaagacacgctgg
gcaacactcaccatccagagatacacaagaggagccctggctaggcggctggcagacctt
ctgcgctacaccaaggcagcgctgatcatccagaagacataccgtatggtggcgataaga
cagatgtttctgatgatccgcgaggccaccgtcaccatccaggctttcaccaggggctcg
ctagcacgacgccaatacagacgggtggtggcagagcgggctgcggtgttgctccagtct
gcagtgcgtggctggctggcccgccttgcttacaggagggtgagggccgccatagtgttg
atgcagtgttgtgtgaggcggcgggctgccaggagggagctgctgaagctgaaggcagag
gctcgctcggtggagaagttcagagaactcaacaagggcatggaggtcaaactgatgcag
ctacagctcagggccgaccagaaggccagggagagcggtgctctgagagagaccctccag
gcagagcgtaaggcccacaacactgagctggacaccctgcggggggcgctagttaagctg
gagtaccagttagagacccagctccagactcagcagtctcagcccagcaccgccatcaca
gatgaggagacggaggagaggaggagggcagaggagaaagcagcccaggagatcctacga
ctcacacaggaggtgcaggtcctgcgggttgagagggactgtttggggaaagagaaggag
gatctgaccactcgattactggagcaggagacagctcaggaggagagtgtagtacaggct
gtggcccaggaaggtaaagctctgacagcagagctggatgaggagaggaggaagtaccag
ggtctgctcagagagttcaccaggctggagcagagatacgaaaacctacgggaaatgagc
atgctcactgagcactctaagggctacagacggacagattcaaatcaaagcctgatcatg
gagcccccatctccttccccgatgtcgccgcccttttccgggccccctaccttcccagcc
acaccttccttcttcggcctccctcccttcccctctccggaggaggtgaggagggttagt
gtgacgtcccccaccgcagagaggagggcctggcttagctctgacacactcatggacact
ttgatggagaatatgggtgtggctaaagactcagccgggaagatgaccggagaagacctg
tggcacgcctatgatgctgtacgagtggccaacaagttcctggagaaccagctgcgtagc
cagcgctctcaggaggaggcggagctggaggctaaacggacgtgctctgatccctccccc
tctgcagaccagcagtacctggtggaactggtggaagccagggagcaggaggtctgcaga
ctgaggagagaactgaaggagctgagacacacagtcacactcagaagactactggcacag
acaggtccagtgctttcccagtccacagaggattcctctgccccccatgccaaagctggg
actgtcacagggctgctggagtgtaggaagagggatgaggccaagctcatgaagaccctc
atcacagacgtgagggtggacagtgccctctccctgccccctggcctggctgctagtgtg
ctgttcctgtgtgtacgccaggcagactgtagcggagaccaaatccgcgcccgctctctc
tgcactgctgctgtcactgccatgaagggggctctgaaaaaacactgtaatgatgtggac
atgacagcactgtggctgaaaaatgcctgccttctcaatgacctactgacccagcactcc
aaacaggatgaggatttggttccgttgacctctgacctgagtgagttaaaccgtgctctg
agtgccctctgtatccaggcctatcagcagctcctgtccatctcagaaacccgcctgcag
cccatcattgttcctgccatgctggagagtgagatgatcccaggactgtctgggtcgggg
gtaaagctggggaactttaggaagcgtgcggggtctgatcccagggccgtagagaggaat
gcaggggagacccctagtatggctgcagtgctgagggagctgggtgccctccacacggcc
ctgtcccgtcaggccctaccccccaccctgatggagcaggccttccgtcagctcacccac
ctcctttctgcctctgccctcaacagcctgctgctacgcaaggacatgtgtagctggagc
cgcggcttgcagatacggtataatgtgagtctgctggaggagtggctgcggacccgtggg
ctgcaggcagggggagctgtggccctgttggagcctctcatccaggccgctcagctcctg
caagtgggcaagaagacagacgctgacgcacaggccctcgttcacacctgcactgccctg
tctacccagcagattgtgaagattctgaccctgtacacccctcacagtgacctagaggag
agggtgacactcaattttatccgcacagtgcaggctctgctgaaggagcgttcaggcggt
cagcctccacagctgctgatggatgtacggcgtgtgttccccgtcaccttcccctacctg
ccacccccgcctgtccgcgctgaccagctggacatcccagactccctcaaaatctccttc
ctacgacggccttag
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integrated database retrieval system
