Oncorhynchus tshawytscha (Chinook salmon): 112250911
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Entry
112250911 CDS
T05605
Symbol
rorca
Name
(RefSeq) nuclear receptor ROR-beta
KO
K08533
RAR-related orphan receptor beta
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112250911 (rorca)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112250911 (rorca)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112250911 (rorca)
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
112250911 (rorca)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
112250911
NCBI-ProteinID:
XP_024277220
UniProt:
A0A8C8J5S6
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All DBs
Position
LG05:complement(55959426..55976299)
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AA seq
469 aa
AA seq
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MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQASQELAAAREVGAEVEGHG
RAYSRGSSAALSDLDDIATLPDGLLFDLPLTPEGAEREYCNLEMIGGSSSSSQSSPEQNG
LDFRDGNHHIKHEYQLLHESSLFTHTLLNTLPEGFSILEIERITASVVKSHMETSQHGSE
ELKRLVWSLYTPEETRSFQSKSAEVMWQHCAIHLTNAIQYVVEFAKRITGFLDLCQNDQI
ILLKAGCLDVLLIRMCRAYNPINNTVLFDGKFASAQTFKALGCDDLVGAVFDLAKSLSRI
QLSEEEMALFSAAVLLSPDRPWLKDTQQVQKLQEKVYLSLQHCLHRCGSSEEKLAKMVSK
LPMMKSICNLHIDKLKFFRLLHPETAYNFPPLYREVFSSEITFPDSTMG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagagcacaaattgaagtaataccctgcaagatctgtggggacaagtcatcaggtatc
cactatggtgtaatcacctgtgaaggctgcaagggtttcttcagacgcagccagcagaac
aatgctatgtactcctgctcccggcagaggaactgtctgattgaccgcaccaatcggaat
cgctgccaacattgccggctgcagaagtgcctggccctgggcatgagccgtgatgctgtg
aagtttggccgcatgtccaaaaagcagagagacagcctatacgctgaggtccagaagcac
caggcatcccaggagttagctgccgcccgtgaggtgggagccgaggtcgaaggtcatggc
cgggcatacagcagaggctccagtgctgccctcagcgaccttgacgacatcgccactctg
ccggatggcctgctgttcgacctacccctgacaccagagggcgccgaaagagagtactgc
aatctggagatgatagggggcagcagctcctcctctcagagttcgcccgaacagaacgga
ctggacttcagagatggcaaccaccacatcaagcacgagtaccagctgctgcatgagtcc
agcctgttcacacacacgctgctcaacactctacccgaggggttctcaatacttgagatc
gagcgtattactgctagtgtggtaaagtctcacatggagaccagtcagcacggcagtgag
gagctgaagagacttgtctggtccctgtacacccctgaggagacacgcagcttccagagc
aagtctgcggaagtcatgtggcagcattgtgccatccacctcaccaatgccatccagtac
gtggtggagtttgccaagcgcatcactggattcctggatctttgtcagaacgaccagatc
attcttctcaaagcaggatgtctggatgtgcttctgattcgcatgtgtcgtgcctacaac
cccatcaacaacactgttctgtttgatggcaagtttgccagtgcacagaccttcaaagct
cttggttgtgatgaccttgtgggtgccgtgtttgacctggccaagagccttagccgtata
cagctctctgaagaggaaatggctctgttcagtgctgctgttctcctgtcaccagaccga
ccatggttgaaagacacccaacaggtgcagaagcttcaagagaaagtatatctctctctg
cagcattgtctacatagatgtggctcatcggaggagaaactggcaaagatggtgtccaag
cttcccatgatgaagtccatctgcaatctccacattgacaagctcaagtttttccgtctc
ctccacccagagacggcatacaatttcccccctctgtaccgcgaggtgttcagcagtgaa
atcaccttcccagactccacaatgggctaa
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