Oncorhynchus tshawytscha (Chinook salmon): 112250945
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Entry
112250945 CDS
T05605
Symbol
rexo1
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112250945 (rexo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
otw03009
]
112250945 (rexo1)
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
RNases
112250945 (rexo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Motif
Other DBs
NCBI-GeneID:
112250945
NCBI-ProteinID:
XP_024277280
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All DBs
Position
LG05:57206004..57216373
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AA seq
1313 aa
AA seq
DB search
MLRSTGFFRGIDCPFYTDSCNGKSGKYGCNRPYCHFRHSKHRRASYGSNDTRTSKELYSK
QKEQGGYDPFNPEVVRPEEQQNGEPAAATVDMGALELELVNRAIEAVRSEVEREKKKLSQ
IGDLEYDPSASSPKVLLKPLSQTGDQKYDPTASSPKLVPKPPSRFGDQEYDPTASSPKVM
ANWPKPQAVASHLAYDPGSYQMTTTADYNPTPRSSKYTLDSDSKDNHASSMEYVPTSVTK
TALKRPAPRTRSPHLPSPPTSPKYSNNAAFSKNKYTVDNSKPSTDMEYDPLSNYSAKIAV
KDKKDQRTGASKGEVKKRPHMSGTGKLSTDEEYVPTTKKPRQVIPDPLKYTASFSESDEE
SSGTEYRPTSLSRLQRRKSSSGSVEEAFGPGKGERTETALGGLKQQRSREAKEQEDSENQ
EVARQKDKPETEKVPGKTSHMKSIKVEKVHKSEKESSKKSGSSKEKGAGDGKKISDSKTS
SHETAKKDSKNQGKKEEEKSKIKDKSIDKGKEGQEEKRSDGKSKLRTDKVKGASSKSERE
KGGGDSKKLKTSDKEKDSSKFKEHKNGKHDNSGRERGSIKVSKGSSNSSKDKVKKNSRSF
LDGKTGKVKQRSLSHVDLFGDESAEEKREEDDEEEKIVRKSAAAFKRGHLNKRNASELTP
SSSEDDDVGPEDDRDYDDMDGGGVDYSGLQMDMDFDLDEDPMEECLRIFNESKDVKTEDK
GRQAKPSKDSDDEDATDSNQTTLFPGQKKRVSHFSAKGSTEATPKPPPYRRLTAQEICYQ
RMQIAQQQASQLAAAVKTASTPRPRPSLSPFPGERKRVAHRPTPLPSSSKSGLVEAKLAG
SRVLSPTRTLPGGVSVKAQTSAGILSKTTTTIAQKRVAHTPTMKSSAMKRPVIPTEFGAK
VPTNVRQRYLNNFIDECMKFCPSEDLAFQMALEEEKVVYDRSSSKNIYLNVAVNTLKKLR
SKSSSPTSPVARSPAVVGNRKAQSHEEVLGGRLAAKTSFTINRTGKQQEEKLSGVRLYRK
LRDYLMTEEQLQEHGYPRPHPERSGRAVVHNVPEKKNVDPFAKVCCRCGAEYKINANGNC
VRKEECNHHWGRLRRHKVSGGWETNYSCCSGTVGSPGCSVSKQHVQDGRKESLDGYVQTF
EKQLPPDGNGGVYALDCEMCYTKQGLELTRVTVINSELKVIYDTFVKPESKVVDYNTRFS
GVTEEDLENATITLRDVQAVILNMFSTESILIGHSLESDLFALKVIHSTVVDTAIVFPHR
LGLPYKRALRNLMADHLKRIIQDSVEGHDSSEDACACMELMIWKIREDAKVKR
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgctgagatccaccggtttcttccgtggaattgactgcccgttttacacggatagctgc
aatgggaaaagcggcaaatatgggtgcaacagaccatactgccacttcagacacagcaaa
catagacgtgcgtcttatggctcaaatgacactagaacatcaaaagaactttactccaaa
caaaaggaacaaggtggctatgacccattcaacccagaggtagtaagaccagaggagcaa
cagaatggggagcctgctgctgcaacagtggacatgggtgccctcgagcttgagttggtc
aatcgtgccatcgaggcggtacgcagtgaggtggagcgggaaaagaagaagctctcacaa
atcggggacctggaatatgacccttctgccagttctcctaaagtgttgctgaaaccactc
tcacaaactggagaccagaaatatgacccgactgccagttcccccaagctggtgccaaaa
ccaccatcacgatttggggaccaggaatatgatcctactgccagttcccccaaagtgatg
gctaactggccaaaaccacaggccgtggcatcccacttggcgtatgacccaggcagttat
cagatgactacaacagctgattataatcccacccctcgctccagtaagtacaccttggac
tctgacagcaaggacaaccatgccagctccatggaatatgtgcccacctcggttaccaaa
acagctttgaaaaggcctgctcctcgaacacgatctcctcatctaccctctccccctact
agtcctaagtactccaataatgcagccttctccaagaacaagtacacagtggataattct
aaaccatccacagacatggaatatgaccctctctccaactattcagctaaaattgctgtc
aaggataagaaagaccagaggacaggtgcttctaagggagaagtgaaaaaaagacctcac
atgtcagggacaggaaagctgtcaacggatgaggaatatgtgccaaccactaagaagcct
cgacaggtgataccagacccactgaagtacactgccagtttctctgagtctgatgaggag
agctctgggacagagtatcgacccacttctctcagccgtctgcagaggaggaagagtagc
agtgggtcagtggaggaagcctttggtccagggaaaggagagaggactgaaacagctcta
ggtgggctgaaacaacagaggagtcgggaggctaaagagcaggaagactcggagaaccag
gaagtagcaaggcaaaaagacaaaccagaaactgaaaaagtgccaggtaaaaccagccac
atgaagagcatcaaagtagagaaggtgcataaatctgaaaaggagtccagtaaaaagagt
ggtagtagtaaagaaaaaggagctggggacggtaagaaaataagtgattcaaagacatca
agccacgaaactgcaaagaaggacagcaagaatcagggaaagaaagaagaggagaaaagc
aagataaaggataaatccatagacaaaggcaaggagggacaggaagaaaagagaagtgat
ggaaagagtaagctaaggacagacaaagtaaaaggggcgtcaagcaagagtgagagagaa
aaggggggtggggatagtaaaaaactgaagacttcagacaaggaaaaggactcttcaaag
tttaaagaacacaagaatggtaaacatgacaacagtggaagagaaaggggctccattaaa
gttagcaaagggagttctaacagcagtaaagacaaggtgaagaaaaacagcagaagcttc
ttggatggcaaaacaggaaaggtgaaacaaagatctctgagtcacgtggatctgtttggg
gatgagagtgcagaggagaaacgcgaggaggatgacgaggaggagaaaattgtgaggaag
tcagctgctgctttcaagagggggcatttgaataagaggaatgcctcagagctcaccccc
tcatcctcagaggatgatgacgttggtccagaggatgacagagactatgatgacatggat
ggtggtggggtggactactccggtctgcagatggacatggactttgacctggatgaagac
ccaatggaggagtgcttacggatcttcaatgaatccaaggatgtgaagaccgaggacaag
ggaaggcaagccaagccctctaaagattctgatgatgaggatgccacagacagcaatcaa
actactctctttcctgggcagaagaagagggtttcacatttctccgccaaaggaagtact
gaggcaacaccaaagcctccgccatacaggagactgactgcccaggagatctgttaccag
cgcatgcagattgcccagcagcaggcctctcagcttgcagcagccgtgaagactgcctct
acacccagacccaggccaagcctcagccccttccctggggagaggaagagagtagcccac
cgccccacccccttaccatcctcctccaagtctggtcttgtcgaggcaaagctagcaggc
agcagagtgttgtcgcccaccaggactctcccaggtggtgtctctgtgaaggcccagaca
tcagcgggcatcttgtcaaagaccaccaccactattgcacagaagagggtggcacacact
cccacaatgaagagctctgcaatgaagcgcccagtgattcccactgagtttggagccaaa
gtgcccaccaacgtccgccagcgatacctcaacaactttatagatgagtgtatgaagttc
tgcccctctgaagacttggccttccaaatggccctggaggaggagaaggtggtgtatgac
cggagcagcagtaagaacatctacctcaacgtggcagtcaacacactgaagaagctacgc
agcaagagcagctcccccacctcacccgttgccaggagccctgcagtggtggggaacagg
aaggcccagtcccatgaggaagtgctggggggacgcctcgctgccaagaccagcttcacc
atcaacaggactggcaagcaacaggaggagaaactcagtggtgtcaggctgtacaggaag
ctgagggactatctgatgacggaggagcagctgcaggagcatggataccccaggccacac
cctgagcgctcaggtcgagccgtggtccacaacgtcccggaaaagaagaatgttgaccct
tttgccaaggtgtgctgtcgatgtggggccgagtataagatcaacgccaacggcaactgt
gttcgcaaggaggagtgtaatcatcactggggccgtctgcgcagacataaagtgtcggga
ggctgggagaccaactacagctgctgctcagggactgtgggctctcctggctgctctgtg
tctaagcaacacgttcaggacggacgcaaagaatcattggacggctatgttcagaccttt
gagaaacagctgcccccagacggcaacggtggagtctacgccctggactgtgagatgtgt
tacacaaagcagggtctggagctgaccagggtgactgttatcaactctgagctgaaagtc
atctatgacacatttgtcaaacccgaaagcaaagtggttgactacaacacacggttttcg
ggtgtaacagaggaggacctggagaatgcgaccatcaccctgagagacgtgcaggctgtg
atcctcaacatgttcagcactgagtccatcctcataggacacagcctggagagtgacctc
tttgccctcaaggtcatacacagcactgtagtagacacagccattgtgtttccccatcgc
ctgggcttgccatacaagagggccctgaggaacctcatggcagaccacctcaaacgcatc
atacaggacagcgttgaaggtcatgactccagtgaggacgcctgcgcctgtatggagctc
atgatatggaagatccgagaagacgccaaggtgaagagatga
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