KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112250957
Entry
112250957         CDS       T05605                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250  Viral life cycle - HIV-1
otw04144  Endocytosis
otw04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    112250957
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    112250957
  09143 Cell growth and death
   04217 Necroptosis
    112250957
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:otw04131]
    112250957
   03400 DNA repair and recombination proteins [BR:otw03400]
    112250957
Membrane trafficking [BR:otw04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    112250957
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    112250957
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_14 AAA_5 RuvB_N AAA_22 IstB_IS21 AAA_18 AAA_25 DUF815 AAA_2 nSTAND3 AAA_33 RNA_helicase AAA_17 AAA_24 AAA_7 PhoH Mg_chelatase ResIII AAA_28 Parvo_NS1 NACHT KAP_NTPase bpMoxR Sigma54_activat DUF5906 Viral_helicase1 MCM
Other DBs
NCBI-GeneID: 112250957
NCBI-ProteinID: XP_024277297
LinkDB
Position
LG05:57592971..57601228
AA seq 438 aa
MANNNLQKAIDLASKAAEEDKAKNYEEALRLYQHSIQYFLHVVKYEAQGDKAKQSIRAKC
AEYLDRAEKLKEYLKKKEKAPPAKPVKESGSDDKGNESDEGEGDPEKKKFQNQLSGAIVM
EKPNIKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKA
VATEANNSTFFSISSSDLVSKWLGESEKLVKNLFSLARENKPSIIFIDEIDSLCGSRSEN
ESEAARRIKTEFLVQMQGVGNDNDGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPEEHAR
SFMFKLHLGSTPSELIESDYVTLGKKTEGYSGADISVIVRDALMQPVRKVQSATHFKRVQ
GSSWNHPNLVVDDLLTPCSPGDPDAIEMTWMDVNGEKLMEPVVCMADMLRSLHNTKPTVN
EQDLDKLKKFTEDFGQEG
NT seq 1317 nt   +upstreamnt  +downstreamnt
atggctaataacaatttacagaaagccatagatcttgcaagcaaggctgcagaggaggac
aaagctaaaaactatgaggaagctctccggttgtaccagcattctattcagtacttcctt
catgttgtgaagtatgaggcccagggagacaaggccaagcaaagcatcagggcaaagtgt
gcagagtacctggaccgagcagagaagctgaaggaataccttaagaagaaggagaaggct
cctccagccaagcctgtcaaagagtctgggtctgatgacaaagggaatgagagtgatgaa
ggtgaaggtgacccagagaaaaagaagttccaaaatcaactctcgggtgccatcgtcatg
gaaaagccaaacatcaagtggagtgacgtagctgggcttgagggtgcaaaagaggccctt
aaagaagctgtcatcttgcccatcaaatttcctcacctcttcacaggaaagcggactcca
tggagagggatcttgctctttggccctcctggtacaggaaagtcttacctggccaaggct
gtggccacagaagccaacaactccaccttcttctctatctcctcatctgacctggtgtca
aagtggctgggggaaagtgaaaagttggtgaagaatctatttagcctagccagggagaac
aagccctccatcatcttcatcgatgagatagactctctgtgtggctccaggagtgagaac
gagagtgaagcagcccgccgcatcaagactgagttcctggtccagatgcagggtgttgga
aatgacaatgatggagtcctggttctaggagccacaaacatcccctggacattggactct
gctattaggagaaggtttgagaagcggatctacatccctctgcctgaggagcacgcccgc
tccttcatgttcaagctacatctaggctccacccccagtgagctcattgaatcagactat
gtgacccttggtaagaagacagaaggctactctggagctgacatcagcgtcatcgtgagg
gacgccctcatgcagccagtcaggaaagtgcagtcggccactcacttcaaacgggtccaa
ggatcgtcatggaaccatcccaacctcgtggtagacgacctcctgaccccatgctcacca
ggagatccagacgccatagagatgacctggatggatgttaatggggagaaactcatggag
cctgttgtttgcatggctgatatgctgaggtcactgcacaacaccaagccaactgtgaac
gagcaggacttggataaactcaagaagttcacagaggactttggtcaggaaggctaa

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