Oncorhynchus tshawytscha (Chinook salmon): 112250973
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Entry
112250973 CDS
T05605
Symbol
lingo3a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3a
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112250973 (lingo3a)
Membrane trafficking [BR:
otw04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
112250973 (lingo3a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
LRR_1
ig
Ig_2
LRR_LRWD1
Cupin_1
LRR_6
LRRNT
LRR_9
V-set
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
112250973
NCBI-ProteinID:
XP_024277316
UniProt:
A0AAZ3PKP1
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All DBs
Position
LG05:complement(54539235..54573801)
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AA seq
606 aa
AA seq
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MAAGPGMGWPGLFLLLMTTVASTQSQGCPQRCECMAKLKSVACQGKRLSALPDSISSDTR
LLDMSGNMLRWVEHGDLLSYPRLEELDLSENIISVLEPNAFSSLQNLRVLSLRGNQLKLV
PMGAFSRLTNLTTLDLSGNKIVILLDFTFQDLKSLRNLEVGDNDLVYISNKAFLGLVGLR
QLTIERCNLTSISSQSLSYLRSLVTLRLRYLSISSLDDQNFRKLGGLRGLEIDHWPFLEH
ISPHSLQGLNLSWLSITNTNITSVPTAALRSLAHLTSLNLSYNPISVLESWALRDLVRLK
ELHLVNTNLMTVQPYALGGLRQIRLLNLSTNALVTLEEGAFQSVNTLETLRVDGNPLSCD
CRLLWILQRRKTLNFEGKSPVCAGPMEVQGRALSAFSDSALFDHFTCQKPKIRNRKLQPV
TAREGQVVSFVCRAEGEPTPIIFWVSPQRRRITTKSTGRVIVLPEGTLEIRYAQVTDSGT
YICIASNAGGNATYFATLTVSALPLDAALMANRTYYTGDLNETNLNDTKVFLKFTLDLKT
ILISTAMGCCLFLGVVVFCFLMLFAWSRGRGQHKNNFSVEYSFRKVDGPAASGGQGGARK
FNMKMI
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggtccaggcatggggtggcctggcctgttcctgctgctgatgactactgtg
gcctccactcagagccaaggctgtccccagcgctgtgagtgcatggccaagctcaagtct
gtggcctgccaaggcaagcgcctgtctgccctccccgacagcatctcatcggacacacgc
ctgctggacatgagtgggaacatgcttcgctgggtggagcatggcgacctcctctcctac
cctcggctggaggagctagacctgagtgagaacatcatcagtgtcctggagcccaacgcc
ttctctagcttgcagaacctgagggtgctgtcgctgagggggaaccagctcaaactggtc
cccatgggcgcattctcacgcctcaccaacctcaccacactagacctgagtgggaacaag
atcgtcatcctgttggacttcactttccaggatctaaagagcctgaggaacctggaggtt
ggtgacaacgacctggtctacatctccaacaaggcattcctgggcttggtgggtctgagg
cagctcaccattgagaggtgcaacctgacctccatctccagccagtctctctcctacctc
cgcagcctggtcactctgcgcctgcgctacctcagcatctcctccctggatgaccagaac
ttccgtaagctgggtgggctgcggggtctggagatcgaccattggcccttcctggaacac
atctccccccacagcctccagggcctcaacctgtcttggctatccatcaccaacactaac
atcacctctgtgcccacagccgccctacgcagcctggcccacctcaccagcctcaatctc
tcctacaatcccatctcagtgctggagtcctgggcccttagggacctggtccggctgaag
gagctacacctggtcaacaccaacctgatgacggtgcagccgtacgcccttggtggcctt
cggcagatccgcctgcttaacctgtccactaacgccctggtaaccctggaggagggtgcc
ttccagtctgtcaacaccctggagacgctgcgtgtagatgggaaccctctgtcctgtgac
tgccgcctgctttggattctccagcgcaggaagaccctcaactttgaagggaagtcccca
gtgtgtgcgggacccatggaagtgcagggcagggccctcagcgccttctcagactctgcc
ctctttgatcactttacctgccagaagcccaagatacgcaacaggaagctgcagcctgtg
actgccagggagggccaggtagtgtcctttgtgtgccgggcggagggagagcccacacct
atcatcttctgggtatctccccagcgccgtcggatcactaccaagagcactggacgtgtc
atcgtcctacctgagggaacgctggagatccgctacgcccaggtgaccgacagcggcacc
tacatctgcatcgccagcaatgccgggggtaacgccacctactttgccacgctgaccgtg
agcgcgctgcctctggacgcagcgctcatggccaaccgcacatactacacaggtgacctc
aacgagaccaatctgaacgacaccaaggtattcctcaagttcaccttggacctcaagaca
atcctgatatccacagccatggggtgttgcttgttccttggggtggtggtcttctgtttc
ctgatgctgttcgcatggagccggggccgggggcagcacaagaataacttctcagtagag
tactccttcagaaaggtagatggccctgctgccagtggcggacagggaggggcccgtaag
ttcaacatgaagatgatttga
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