Oncorhynchus tshawytscha (Chinook salmon): 112251023
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Entry
112251023 CDS
T05605
Name
(RefSeq) probable voltage-dependent R-type calcium channel subunit alpha-1E isoform X1
KO
K04852
voltage-dependent calcium channel R type alpha-1E
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
otw04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112251023
04020 Calcium signaling pathway
112251023
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112251023
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
112251023
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
112251023
NCBI-ProteinID:
XP_042178111
LinkDB
All DBs
Position
LG05:complement(60050501..60166300)
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AA seq
2253 aa
AA seq
DB search
MILATIIANCIVLALEQHLPGEDKTPMSKRLEKTEPYFIGMFCFEAGIKVVALGFVFHKG
SYLRNGWNVMDFIVVLSGILATAGAHMNIPVDLRTLRAVRVLRPLKLVSGIPSLQIVLKS
IMKAMVPLLQIGLLLFFAILMFAIIGLEFYSGKLHNTCLPMPNILENETVDKSESEFPCG
VRKCPDKYACSETWIGPNDGITQFDNILFAVLTVFQCITMEGWTTVLYNTNDALGPTWNC
MYFIPLIIIGSFFVLNLVLGVLSGEFAKERERVENRRAFMKLRRQQQIERELNGYRAWID
RAEEVMLAEENKNLGPSALDAPKRLSEWNTGGNHVLKRTTIKRRGVDAVHRGPEEEQYGD
ISSVGIPMTRASIRSAKRGPTAYFKRKERLLRISIRRMVKTHTFYWTVLGLVALNTLCVA
IVHHNQPHWLSVFLYYAEFLFLGLFLTEMCLKMYSLGPRLYFHSAFNRFDCGVIVGSIFE
VMWGFFRPDMSFGISVLRALRLLRIFKITKYWASLRNLVVSLMNSMKSIISLIFLLFLFI
LVFALLGMQLFGGRFIFEDYTPTNFDTFPAAIMTVFQILTGEDWNEVMYNGIRSQGGVKS
GMWSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEDEEAAFNQKHALQKAKEV
GAMSSLMSSHRRRRPYLYRKRAIHRSRPAYSLEEAESLAEGPPCPPLNSSNSFMSRGERR
RRMTMSVWEQRTSQLRRHRQMSSREILFSSPSEEQEAPPGCPHNLKATGTPTGSLKLADP
TADPTASTAQPPKPMDQTLEEPPLSMGVLEPPLSVPLAEPPIPIDSPLLDPPTSAVVSIP
EPTESEPCPEGQLDDTDHCHPGLNGRRSPRLNGERRQRAVRKFRPPAGDTLTPDMAGMRL
RRPRGTGHHEAQVGARGLDSPQGEGSSRSVSKERKTLEERQDKERRACITGETSQPSETG
EAEHRQGDPNQAGGPELQNREEGPQSEPPPIQPFQAAVPELPEGQTRDSDTGNNATTLIQ
DKSPLSSSIYIEVTNVQSSLELTPITGNSKDMEASKPEKEEEQLTSPANIVTPDSMFIFK
PGNPIRRACHYVVNLRYFETCILLVIAASSIALAAEDPVSATSNWNKVLRYFDYVFTGVF
TFEMIIKMIDQGLILHDGSYFRDLWNILDFIVVVGALVAFALTNVLGNNKGRDIKTIKSL
RVLRVLRPLKTIKRLPKLKAVFDCVVTSLKNVFNILIVYKLFMFIFAVIAVQLFKGKFFY
CTDGSKDTEKDCQGFYIDYEKDKKEVKRRDWRRHDFHYDNIVWALLTLFTVSTGEGWPQV
LQHSVDVTEEDRGPSRGNRMEMSIFYVIYFVVFPFFFVNIFVALIIITFQEQGDKMMEEC
SLEKNERACIDFAISAKPLTRYMPQNRQTFQYRLWHFVVSPSFEYTVLAMIALNTIVLMM
KYYSAPPAYEAVLKHLNTAFTVLFSVECVLKIMAFGFLNYFRDTWNIFDFITVLGSITEI
VVDLQSIETFNMGFLKLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFI
YAIIGMQVFGNIRLDEETHINQHNNFKTFFGALMLLFRSATGESWQEIMLSCLGGQKCEP
DPLALTSDHEERCGTEFAYFYFVSFIFFSSFLMLNLFVAVIMDNFEYLTRDSSILGPHHL
DEFVRIWGEYDRAACGRIHYTDMYEMLTLMSPPLGLGKKCPSKVAYKRLVLMNMPVDEEM
SVHFTSTLMALIRTALEVKIARGGEDRGQMDSDLQKEISVIWSHLSQKTLDLLVPIHKAS
HMTIGKIYAAMMIMDYYKQSKAKKLRQQLEEQKHAPMFQRMDASSLPQEILCSAKALPFL
PHSPGSALTRGGFVALSPISPQEMFMQPMSQDLEDREEDYHNYHHHHLLHHQLHTLVPER
KEFNRNLCPTNRQDDPLRVPGRAVSIRASSMPRLAVDTQVGTDSSKSMKRSFSTIGDQCV
NGLWQEEYSLKRVSPDRLNRPRQRSIRGIRCNLREPVDHERGRSKERRHLLSPDVSRCNS
EERSQDPSQERKQSRSPSEGRTHALHRQGNTSGSPDLSSTPRGRRQLPQTPLRPRPHISY
SPLVCRAHLSPPAASEGRARTQEAPGETEDPSLREEGERLAPESGAGVGVVIGVGGPGLG
VSHPHHSPHRYISEPYLTLHEELHSPDSSGLDETLTFEAAIATSLGRANTISSAPQLRHN
WQVPNGHFHKRLGQASSVVACELLSDTDEDDRC
NT seq
6762 nt
NT seq
+upstream
nt +downstream
nt
atgatcttagccaccatcatcgccaactgtatcgtactggctttggagcagcacctgcct
ggagaggacaagactcccatgtccaagagactggaaaagacagagccttacttcattggg
atgttctgctttgaagctgggattaaggttgtggcgttgggatttgtattccataaagga
tcctacttgaggaacggctggaacgtcatggacttcattgtggttctgagtgggattctg
gccacagcgggagctcacatgaacatcccagtggacctgcggaccctgcgggccgtacgc
gtgctcagacccctcaaactggtctctggaatccccagcctgcagatagtcctgaaatcc
atcatgaaagccatggtgccgctgctccagatcggcctgctgctcttctttgccattctc
atgtttgccatcatcggcctggagttctacagcggaaagctccacaacacctgtctgccc
atgccaaatatcctggagaatgagacggtggacaagtcggagtcagagttcccgtgtggg
gtgaggaagtgccctgacaagtacgcctgcagtgaaacctggatcggccccaacgatggc
atcacccagtttgacaacatcctgtttgctgtgctcactgtcttccagtgcatcaccatg
gagggctggaccaccgtgctctacaataccaacgatgccttaggccccacgtggaactgc
atgtacttcatccctctgataatcatcggctccttcttcgtgctgaacctggttttggga
gttctctcaggggagtttgccaaggagagggagcgggtggaaaaccgcagggcattcatg
aagctccggaggcaacagcaaattgagcgggaactcaatggctaccgagcctggatcgac
agagcagaagaggtgatgcttgcggaggagaataagaatttaggaccttctgctcttgat
gctcccaagaggctgtctgaatggaatacaggcggtaaccatgtgctgaagaggaccacc
atcaagaggagaggggtggatgccgtacatcggggcccagaggaggagcagtacggtgac
atctcttctgtgggcatcccgatgaccagagccagcatcaggagtgctaagagaggaccc
acggcttatttcaagcggaaggagcgtctgttgcgtatctctatccgccgcatggtgaag
acacacaccttctactggaccgtactgggcctggtggccctcaacacactctgtgtggcc
atcgtccatcacaaccagccccactggctgtctgtgttcctctactatgcagagtttctc
ttcctgggtctgtttctcactgagatgtgtttaaagatgtacagcctgggacccagactc
tacttccactccgccttcaaccgcttcgactgcggcgtgatagtgggcagcatctttgag
gtgatgtgggggttcttcaggcctgacatgtccttcggcatcagtgtgctgcgcgctctc
cgtctgctgaggatattcaagatcaccaagtactgggcgtcgctgaggaacctggtggta
tccctgatgaattctatgaagtccatcatcagcctcatcttcctcctcttcctcttcatc
ctggtctttgctctgctgggcatgcagctattcggtggcaggttcatctttgaagactac
actcctacaaactttgacacatttcctgctgccatcatgactgtctttcagatcctgaca
ggagaagactggaatgaggtgatgtacaatgggatccgctcccagggaggagtgaagtca
ggaatgtggtcctccatatacttcattgtgctcacactctttggtaactacacactgctg
aatgtcttcttggccattgctgtggacaatctggctaatgcccaggaactaaccaaggac
gaagaggacgaagaggctgctttcaatcagaaacatgctctccaaaaagccaaggaagtt
ggggccatgtcttccctgatgtcatcacacaggaggaggagaccttacctgtacaggaaa
agagcgatacacaggagccggcctgcctactctctggaggaggctgagagcctcgccgag
gggcccccctgcccgccattgaattcctctaactctttcatgtccaggggagagaggaga
agacggatgaccatgtctgtgtgggagcagagaaccagccaactgcgcaggcaccggcag
atgtccagccgagagatcctcttcagcagccccagtgaggagcaggaagcgccccctgga
tgcccccacaacctcaaagccacaggcacacccacaggcagcctgaagctggctgacccc
acggctgatcctacggcctccacagctcagccccccaagcccatggaccaaactctagag
gagccacccctgtccatgggggtccttgagccccccttgtccgtccctttagcagagcca
cccatacccatcgacagtcccctgcttgacccccccacgtccgcagttgtgtccattccg
gagcccactgaatctgagccatgcccagagggccagcttgatgacaccgaccactgccac
ccaggtctcaatggccgcaggagccccaggttaaatggggagagaaggcagagagcagtg
cgtaagttccgccctcctgctggtgacaccctgacccctgacatggcagggatgaggctc
aggaggccaaggggcacagggcaccacgaagcccaggttggggctagaggcctggactca
ccccagggggaggggagcagtcgctctgtcagcaaggagagaaagaccctagaggaacga
caggacaaggagaggagagcctgtatcacgggagagaccagccagccttctgagaccgga
gaagctgaacacagacagggtgaccctaaccaggctgggggtcctgagctgcagaacagg
gaggagggtccacagtcagaaccaccccccattcagccatttcaggctgcagtaccggag
ctcccagagggccagacaagagacagtgatactggtaacaacgccaccactctgatccag
gataagtcccctctgagctccagtatctacatagaggtgaccaatgttcagtcttcacta
gagctcacccccatcacaggtaacagtaaagacatggaggcatccaagcctgagaaagag
gaggaacagttgaccagcccagccaatattgtcacgcctgacagcatgttcatcttcaaa
cctggcaacccgatccgccgggcctgtcactatgtggtgaacctgcgttactttgagaca
tgcatcctgctggtgatcgctgccagcagtatcgccctggctgcagaggaccccgtgtca
gccacctctaactggaacaaagttttgcgttactttgactacgtgttcacaggtgtcttt
acatttgaaatgataataaagatgatagaccagggcttgattctccatgacggctcctat
ttccgggacctgtggaacattctagactttatcgtggtggtcggagctctggtggccttc
gccctcacgaatgtgttgggaaataataaaggacgggacatcaaaaccatcaagtctctt
cgggttctgcgtgtcctgaggcccctgaagaccatcaagagactaccgaaacttaaggca
gtgtttgactgtgtggtgacctctctgaagaacgtcttcaacatcctcatcgtctacaag
ctcttcatgttcatcttcgctgtcatcgctgtgcagctgttcaaagggaagttcttctac
tgcacagacggatccaaagacacagagaaggactgccaaggcttctacattgactatgag
aaggataaaaaggaagtgaagagaagggattggaggagacatgacttccactatgacaac
atagtctgggccctactcactctgtttactgtctccactggggagggctggccacaggtc
ctgcagcactctgtggacgtgacagaggaggacagaggtcccagcaggggcaacaggatg
gagatgtccatattctatgtcatctactttgtggtcttccccttcttctttgtcaacatc
tttgtggctctcatcatcatcaccttccaggagcagggagacaagatgatggaggaatgc
agcttggagaagaacgagagggcttgcattgactttgccataagtgccaaacccctgacc
cgctacatgcctcagaacaggcagacgttccagtaccgcctctggcactttgtggtctcc
ccctccttcgaatacactgtgctggccatgattgcactcaacaccattgtcctgatgatg
aagtattactctgccccaccagcatatgaggctgtgctgaaacacctgaacacagctttc
actgtgctcttctctgtggagtgtgtcctcaagatcatggcctttggctttctgaactac
tttcgagacacttggaatatatttgacttcatcacagttttgggaagcatcacagaaata
gtggtagacttgcagtcaattgagaccttcaacatgggtttcctgaagctgttccgtgca
gccagactgatcaagctgttgaggcagggttacaccattcgcatcctgctctggaccttt
gtccagtcctttaaggctctcccctacgtttgtctgctcattgccatgctctttttcata
tatgcaatcatcggaatgcaggtttttggaaacatcagactggatgaggagactcacatc
aaccaacacaacaacttcaagaccttttttggtgctctgatgttgttattcaggagtgcc
acgggggagtcgtggcaggagatcatgctgtcatgtttaggggggcagaagtgtgagcca
gaccccttagctctaacatcagaccacgaggagcgctgtggaactgagtttgcctacttc
tactttgtctccttcatcttcttcagttcatttctgatgctgaatctgtttgtggctgta
atcatggacaactttgagtacctcacccgggattcatcgatattggggcctcaccacctg
gatgaatttgttcgtatctggggtgaatatgaccgagctgcttgcgggcgtattcattac
actgacatgtatgaaatgctgaccctcatgtcgccacctctaggcctcggcaagaaatgt
ccatccaaagtggcttataagaggctggtgctaatgaacatgcctgtggatgaagagatg
tcggttcacttcacctccaccctcatggccctgatccgaaccgccctcgaggtgaagata
gccagaggaggggaggaccgaggtcagatggattcagatctacagaaggagataagtgtc
atttggtcacacctttcacagaagaccctggacctgctcgtccccatccacaaagccagt
catatgaccattgggaagatctatgcagccatgatgatcatggactactacaagcagagc
aaagccaagaagctcaggcaacagctggaggagcagaaacacgctcccatgttccagcgt
atggacgcgtcctctctgcctcaagagatcctctgcagtgccaaagccctccctttcctg
ccccacagccctggatctgccctgaccagaggaggatttgtggccttgagtcccatatcc
cctcaggagatgttcatgcagcccatgtcccaggacttagaggacagagaggaggactac
cacaactatcaccaccaccacctgctccaccaccagctccacacactggttccggagcgc
aaagagtttaaccgcaacctttgccccactaacaggcaggatgacccactcagggtgccc
gggcgggcagtctctatccgagcctcctctatgcctcggctggctgtagacacacaggtg
gggacagacagcagcaaatcaatgaagcgctccttctccactattggggatcaatgtgtg
aatggcctgtggcaggaggagtactctctgaagagggtcagtcctgaccgtctgaacaga
ccacgacagaggagcatcagaggaatcaggtgcaacctcagggaaccagtggatcatgag
cgggggcgctccaaagagaggcgtcacctgctgtctcccgacgtgtcccgctgcaactct
gaggagcggagccaggacccgtcacaagaacgcaagcagtcccgttcccccagcgaggga
cgcacacatgccctccacagacagggcaacacttcaggcagcccagacctgtccagcaca
ccccgcggccggcgccaactcccccagacgcccttgcggccacgccctcacatctcctac
tcccccctggtgtgccgagcccacctctccccccctgctgccagtgagggcagagcccgg
acccaggaggcccccggagagacggaggatccctcgttgcgggaggagggggagaggcta
gccccagagtcaggagcgggggtgggggtggtaataggggtgggtggcccagggttaggg
gtcagtcacccgcaccactcacctcaccggtacatctcggagccgtacctgaccctgcac
gaggagttacacagcccagactcctcaggcctggatgagactctgaccttcgaggcggcc
attgcaaccagtctgggccgggccaacaccatcagctctgccccccagctcagacacaac
tggcaggtccccaacggacacttccataaacgcctgggtcaggccagctctgtggttgcc
tgtgagctcttgagtgacacggacgaggatgaccgctgttag
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integrated database retrieval system
