Oncorhynchus tshawytscha (Chinook salmon): 112251028
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Entry
112251028 CDS
T05605
Symbol
sin3b
Name
(RefSeq) paired amphipathic helix protein Sin3b isoform X1
KO
K23213
paired amphipathic helix protein Sin3b
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112251028 (sin3b)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
112251028 (sin3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
mTOR_dom
DUF5760
Motif
Other DBs
NCBI-GeneID:
112251028
NCBI-ProteinID:
XP_042178121
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All DBs
Position
LG05:complement(60487453..60497920)
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AA seq
1218 aa
AA seq
DB search
MAKIQAHSNPKQINQIQDKAYVVQKQVQQQHFQKLKVEDALSYLDQVKIRFGNDPGIYNK
FLDIMKEFKSQSIDTPGVINRVSQLFHGHPDLVLGFNAFLPPGYRIEIPKNGVVFLQSPF
SAQVSPGQGKSIASPAVSATGSPVAEAGSAQSEAVASPESISSSSGPPEPPSRLSLPLPS
RESQSQPQSSSVSPPASEPSPVEFDSAISYVNKIKNRFLDHPEIYRSFLEILHTYQVHCV
INMKEQLEVKESRGRSSSGMTEDEVFSKVASLFKGQEDLLAEFGQFLPDAKRSLFTGSSL
TGKDQLKRAEDEDMSKHSKKRSRPMLLPHMTPLLKKKMKFSCSQDQSFASVGKHGVLREF
TFFDKVRRFFKSQEVYENFLRCIALFNQEVVSGAELLQLVTPFLGKFPELYTQFKSFLGD
KELSHSMSGLSDRYMEGGGGREVDYASCKRLGSSYRALPKTYQQPKCSGRTAICKEVLND
TWVSFPSWSEDSTFASSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRL
SPEDQDRFRLDDCLGGTSEVIQRRAVYRIYGDKAPEIIEGLKRSPATAVPVVLKRLKAKE
EEWREAQQGFNKIWREQYEKAYLKSLDHQGVNFKQNDMKALRSKSLLNEIESVYDERQEQ
STEEGGVGQQGRDGSSAAVVSEPHMVFTYEDKQILEDAASLIIYHVKRQPTIHKDDKDHI
KRIIQHFVPDLFFSRRGELSETEEWTDEEAEVEEGGDRGGGGSSSITGAVAAPVGQPQQL
NGESRRRRCTSPQTAELGGASSHSLAPEGGEKVDLRDPEAEHQKELDGVYNLFFVNNNWY
FFLRLHQTLCQRLLRVYRQAERQLLEHRAEQNRERLLMAEGRRDKASDLAMELRLKQPSE
VELEEYYPAFLDMVRSLLDGNLESTQYEDTLREMFTIHAYIGFTIDKLIQNTIRQLQHLV
SDEVCLQVAELYLAERKRGAAGGNLSSQCVRAAWETSYQWKSERVMAEENCFKVLFIQNK
GQVTLTIELLDTEEAQADDPLDVQCLSSYMEQFVGTESTLCSQTEGYFFKPVFLPRNLRH
FRRWQVRQVEAMRCRREWHRQLGVESAGSLDCRFKLNTHKMVFVMNSEDYMYRRGALVKA
RKSQHRVAVKQHERFDKWHQGWLAEHVPPAADRSVHDWLMGEEEEDMIPCKTTCLNTQVK
GLPVNRYQVHYSRKPPSP
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaattcaggcacacagcaacccgaaacaaataaaccaaattcaagacaaggcc
tatgttgtacaaaaacaagtgcaacaacagcactttcagaaactgaaggttgaagatgcc
ctatcatacctggaccaagtgaaaatacgatttgggaatgaccctggaatatacaacaaa
tttcttgacataatgaaagaatttaaatcacaaagcattgacacaccaggtgttataaac
cgtgtgtctcagctcttccacggacacccagaccttgtcttaggattcaatgccttcctg
cccccaggctatcggatagagattcccaagaatggagtggttttccttcagtcacctttc
tctgcccaggtctccccaggccaggggaagagtattgcaagccctgctgtgagtgccact
ggctcacctgttgctgaagctgggtctgcccaaagtgaagctgtggcatcgcctgaaagc
atctcctcgtcctctggacccccagagccccccagtagactgtccttgccactccccagc
agagagagccagtcccagccacagtcctcctcggtgtccccccctgcctcggagcccagc
ccagtagaatttgacagtgctatcagctatgtcaacaagatcaaaaaccgcttcttagac
catccagagatctacagatccttccttgagatactacacacttaccaggtacactgtgtc
atcaatatgaaggagcagcttgaagtcaaggagagccggggtcgtagtagtagtgggatg
acagaggatgaagttttttcaaaagttgccagcctcttcaaaggccaagaggacttactg
gctgagtttggacagttcttaccagatgctaagagatcattgttcactggcagctccctg
acagggaaagaccaactgaagagggcagaggatgaggatatgagcaaacatagcaagaag
agatcaaggcccatgctgctgccgcacatgacgccactgctcaagaaaaagatgaagttt
tcgtgctcccaagaccagtcctttgcctcagttgggaagcatggagtcttgcgggagttc
accttttttgacaaggttcgacgtttcttcaagagccaggaggtgtatgaaaacttcctc
cgctgcattgctttgtttaaccaggaagtggtttcgggagcagagctgctgcagcttgtc
accccctttttggggaagtttccagagttatatacccagttcaagtcatttctgggggac
aaggagctctctcattcaatgtcgggcctgtcagaccgctacatggaagggggtgggggc
agggaggtcgactatgcatcttgcaagcgcctgggatccagctacagagcactacccaag
acttaccagcagcccaagtgcagcggccgcactgccatctgcaaagaggtgttgaatgac
acctgggtttccttcccctcgtggtcagaggactctacgtttgcaagctctaagaaaacc
ccatatgaggagcagcttcatcgctgtgaggatgagaggtttgaattggatgtggtcctg
gagacaaacctggccaccatccgggtcctggagagtgttcagaagaagctgtcccgtctg
tcgcccgaggaccaggaccgcttccgcctggacgactgtctgggtggcacctctgaggtc
atccagcgccgagccgtgtaccgtatctatggcgacaaggcccctgagattatagagggt
ctgaagaggagccctgctactgctgtgcctgtggtgctcaagagattgaaagcgaaggag
gaggagtggagagaagcccagcagggcttcaacaagatctggagggagcagtatgagaag
gcctacctcaagtccctggaccaccagggggtcaacttcaagcaaaatgacatgaaggcc
ctccgatccaagagcctgctcaatgagattgaaagtgtttatgatgagcgtcaggagcag
agcacagaagaggggggcgtgggccagcaggggcgtgatgggagcagtgcggcagtggtc
agcgagccacacatggtgttcacctatgaggacaagcagatcctggaggacgccgcctct
ctcatcatctaccacgtcaaacgccagcccaccatccacaaggatgacaaggaccatatc
aagcgcatcatccagcactttgtccctgacctattcttctcccgccgcggcgagctcagt
gagacggaggagtggacggacgaggaggccgaggtggaggagggaggagaccggggaggt
ggtggtagcagcagcataacaggagctgtagcagcaccagttggccagccacagcaactg
aatggggagtcgaggcggcggcgctgcacctctcctcagacagcggagctgggtggagcc
tcctctcacagcctggccccagaaggaggggagaaggtggacctgagagaccctgaggca
gagcaccagaaggagctggacggagtctacaacctgttcttcgtcaacaacaactggtac
ttcttcctgcggctgcaccagaccctgtgccagcggctgctgagggtgtaccggcaggca
gaacggcagctgctggagcaccgagccgagcagaaccgtgagaggctgctgatggcagag
ggtcgcagggataaggccagcgacctggccatggagctccgcctcaaacagccaagtgag
gtggaactggaggagtactacccagcgtttttggacatggtgcgcagtcttctggatggg
aacctggagtctacgcagtatgaggacacactgcgggaaatgttcaccatacacgcctac
atcggcttcaccatcgacaagctcatccagaataccattagacagctgcagcacctggtg
agtgacgaggtgtgcctgcaggtggctgagctgtacctggctgagaggaagaggggtgca
gcgggggggaacctgtcatcccagtgtgtgagagcggcctgggagaccagctaccagtgg
aagtctgagagggtcatggctgaggagaactgcttcaaggtgttgttcattcagaacaaa
ggacaggtcaccttgaccattgagctgctggacacagaggaggcccaggccgatgatccc
ctggatgtgcagtgcctgtccagctatatggaacagtttgtagggacggagtcgacgctt
tgctcgcagactgaaggctactttttcaaacctgtatttttgcccaggaacctgaggcac
ttcagacgctggcaggtgcgccaggtggaggcgatgcgctgcagacgggagtggcacagg
cagctgggtgtggagagtgctggcagtctggactgccgctttaaactcaacacccacaag
atggtgttcgtcatgaactctgaggactacatgtaccgccggggagcgctggtcaaagcc
aggaagtcccagcacagggtagctgtgaaacagcacgagcgctttgacaagtggcaccag
ggctggctggcagagcacgtgcctccagcggccgatcgctcggtccacgactggctgatg
ggtgaggaggaagaggacatgatcccctgcaagaccacctgcctcaacacacaggtcaaa
ggcctgcctgtcaacagataccaggtgcattacagtaggaaacccccctctccctag
DBGET
integrated database retrieval system
