Oncorhynchus tshawytscha (Chinook salmon): 112251119
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Entry
112251119 CDS
T05605
Name
(RefSeq) Hermansky-Pudlak syndrome 3 protein
KO
K20190
Hermansky-Pudlak syndrome 3 protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112251119
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
112251119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HPS3_C
HPS3_N
DUF5119
Motif
Other DBs
NCBI-GeneID:
112251119
NCBI-ProteinID:
XP_024277632
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All DBs
Position
LG01:44747018..44766364
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AA seq
1049 aa
AA seq
DB search
MVHVYNCHPFASQQIVQAEQEPGLVCCGGGVLFVESAGGCKIEAFQLEAEGCPLICRFAT
MGTVQSILHSEIGDYLVTIEEKNNVTYLRTYTNWRYQVAEKTRVGVRLLGHFLRGSSMRG
APKEQMEIIEIPLFERPLCVACCGVTGDLLVGCPKSLVLFSLKRQALNDKLSILDFERCL
ILHLPGLSPQQVAICSGYIALQAELEVLVVKLERLPGSTPTQKSADQKSQDHCLVPKDMI
TGAEHNNEIEVRKEGLAGHLDQDDFFIFPKHQELLGDRAKDCGVKVSLEWTGMESEARGI
LAITYILYRRFAPDFFQGCTVEDTRLHSLQFHPVFTSNQEVCAEGGRGVEPTCVFCFFSL
PNTGYVYSVRGGVEMVSVYQYPEKAQQAVLTDLFLHIITKNALQCFSVRCSAVAARAEDP
YIDTTMKACPPITMEVCALRIQLFIGLKALCHDRHHIVLLTAADVETREDTERAARRNLN
RKSSSTKHRDPIEMSRGWNLYVVNTVPPLQLYNEMVEYSKKYEETNPLSQSCLHLLSEAH
LLLRATLLDPRVGNPVEHPQSIDLNLAQSLGYTATDKIGSTTDRTTDRQELQKAFQESCA
HLGDCFSRFDKRDCHLALPYYKMSGLSVTEVISRNRCLSSSPCGYGKGFLFFLKHSLYEE
TMEELTEETANEVLDIFGVAEPSQLPHVIASPSMVRASPDSGLAHLERLESIGAPSVPLT
LSKAALALRMGDLQLYRQHMDRHTEMLQVYGFIEEHKLLLHGRGHTVVPTPLAHHLRDSQ
EGLLVAAMVALHENNKVKLDEADLFFQKLCGNLSGPQGGPQLMVDFWEALLMASSQEAVI
QELLFRLTSVYIDRVTRRDSQGMKPLKTADDLINSCSHYGVPYPWVSILTPDHFSIIQDH
QEDLQKLQSLLCGPTLDVSSILPLLEQLPDGDNAGLSVHLLCATKLDCHESSIERLLDRC
PQAIIPYANHELQNDKMTLWWQKLFPELCERTRAAGGENTILLSALKETLVVVAMELNPL
EFLDLLPDDGTAHFFLPHLLECSQRNLMT
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggttcacgtatacaactgccatcccttcgcttcccagcaaatcgtgcaagccgaacag
gagcctgggttagtgtgttgtggcgggggtgtcttgtttgtggagtccgcgggaggatgc
aagatcgaggcatttcaactggaagcggaggggtgtcctcttatctgccgcttcgccacc
atggggactgtgcagagcatcctgcacagcgagataggggactacctggtgaccatcgag
gagaagaacaatgtcacctacctccgcacctacaccaactggcgctaccaggtggccgag
aagacacgtgtgggtgtgcgtctgctgggccacttcctgcgtggctcatccatgcgtggg
gctcccaaggagcagatggagatcattgagattccgctgtttgagcgcccactctgtgtc
gcgtgctgtggggtgacaggggacctgctggtgggctgtcctaagagcctggtgctgttc
agtctcaagagacaggccctcaacgataagctctccatcctggactttgagcgttgtctg
atcctccacctcccaggactgtcgccccaacaggtggcgatctgttcggggtacattgcc
ctgcaggcagagctcgaagtgctggtggtcaagctggagagacttcctggctccacccct
actcagaagtcagctgaccagaagtcccaggaccactgtctagtccccaaggatatgatc
actggagcagaacacaacaatgagatagaggtgaggaaagagggtcttgctggtcacctt
gatcaggatgacttcttcatattccctaagcaccaggagctgctgggggacagggctaag
gactgtggggtcaaggtctctctggagtggacaggcatggagagtgaggccaggggtatc
ctcgctatcacctatatcttatacagacgttttgctccagacttcttccagggctgcact
gtggaggatacccgcctgcactccctgcagttccaccctgtattcaccagtaaccaggaa
gtgtgtgctgagggggggagaggggtggagccgacgtgtgtgttctgtttcttctcgctg
cccaacacgggctacgtgtacagcgtgaggggtggagtggagatggtctcagtctatcag
tatccagagaaagcccagcaggccgtcctcactgacctcttcctccacatcatcaccaag
aatgctctccagtgtttctcagtgaggtgttctgcagtggcagccagagctgaggaccct
tacatcgataccaccatgaaggcctgtcctcccatcaccatggaggtgtgtgctttgcgg
atccagctgttcattggtctaaaggctctgtgtcacgatcgccaccacatcgtcctgcta
accgctgcagacgtggagaccagggaggacacagagagggcagctcgcaggaacctgaac
aggaagtcatcctccaccaagcaccgggatcccattgagatgagtcgcggctggaatcta
tacgtggtcaacaccgtccccccactccaactctacaatgagatggtggagtatagtaag
aagtatgaggagaccaaccctctgtctcagagctgtctgcacctgctcagtgaggcccac
ctcctcctgagagccacgctcctggacccccgggtgggaaatccagtggagcatcctcag
agcattgaccttaacctagcccagtctctgggatatacagcaacagacaaaataggcagc
accactgacagaaccacagacagacaggagctacagaaggccttccaggagagctgtgcc
catttaggagactgcttcagtaggtttgataagcgtgactgccacctggccctgccctac
tataagatgtccggcctgtctgtgacagaggtgatctccaggaacaggtgtctgtccagc
agcccctgtggctatgggaaggggttcctcttcttcctcaaacactcactctatgaggag
accatggaggagctcactgaggagacagccaacgaggtgctggatatcttcggtgtggcc
gagccgtcccagctcccccatgttatagccagcccctccatggtcagagccagccctgac
agtggcctggcccacctagagcgcctggagtccatcggagccccctctgtacccctcact
ctctccaaggctgccctggccctccgcatgggagacctgcagctctacagacaacacatg
gacagacacacagagatgctgcaggtatatgggttcatcgaggagcacaaactgctgctg
catggcagagggcacacggtggtgcccacccccctggcacaccacctcagggacagccag
gaaggtctgctggtagcagccatggttgcgctacacgagaataacaaggtcaaactggac
gaggctgacctcttcttccagaagctttgtgggaacctgtcagggccccagggaggccct
cagctgatggtggacttctgggaggccctgctgatggcctcatcacaggaagctgtcatc
caggagctgctgttccgcctcacctctgtctacattgaccgcgtcacgcgccgagacagc
caaggcatgaaaccactcaagaccgcagacgacctgatcaactcatgttctcactatggt
gtgccgtatccctgggtcagcatcctgactccagatcacttcagtatcattcaagatcac
caggaggacctccagaaactacagtccctgctgtgcggtcccaccctggatgtgtcgtcc
atcctgcccctgttggagcagctgccagacggggacaacgcggggctaagtgtgcacttg
ctctgtgccaccaagctggactgccacgagagctccatcgagaggcttctagaccgatgt
cctcaggcgatcatcccctacgctaaccacgagctgcagaatgacaaaatgactctgtgg
tggcagaaactgtttcctgagctgtgtgagagaaccagagcagcagggggagagaacacc
atcttactgtctgcactcaaagaaacgctggtggtggttgccatggagctgaatccactg
gagtttctggacctgttgcctgatgacgggacggcacacttcttcctgcctcacctgctg
gagtgcagccagagaaatctcatgacgtaa
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