Oncorhynchus tshawytscha (Chinook salmon): 112251200
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Entry
112251200 CDS
T05605
Name
(RefSeq) laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112251200
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112251200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
ATG17_like
Motif
Other DBs
NCBI-GeneID:
112251200
NCBI-ProteinID:
XP_024277800
LinkDB
All DBs
Position
LG19:44177978..44211063
Genome browser
AA seq
1785 aa
AA seq
DB search
MLIIQIATLLSAGACVLAQVPEFSDVCTEGSCYPATGDLLIGRAHQLSSNSTCGLHRPEP
FCIVSHLQEEKKCFVCDSTDVYVKSIVNATTGHRVENVVTTFAPNRLKTWWQSENGLEKV
TIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKNWQVYRYFAYDCESAFPAISSGP
MQKVDDVICDSHYSDIEPSTEGEVIFRVLDPVFRIEDPYSPRIQNMLKITNLRVKFTKLH
TLGDNLLDSRMEIKEKYYYAVYDLVVRGNCFCYGHASECAPVDGAGDVVEGMVHGHCMCN
HNTMGLNCEKCQDFYHDLPWRPAEGRNTNACKKCNCNQHSDSCHFDMAVYVSTGNVSGGV
CNECQHNTMGHNCEQCKPFYFQHPERDVRHPSICEPCNCDPVGSLNGGICDRMTDVSSGL
IAGQCRCKPNVEGEQCDQCKQAHYGLGDHLLGCMACTCNALGTVPGGSPCDTDSGVCYCK
RLVTGRDCDQCMPQHWGLSNDMDGCRPCDCDLGGAINNDCSQETGQCVCREHMFGRRCDQ
VESGFYFIALDHYTYEAEDAKFGPGVTVVQRPHPQDRSPTWTGIGFVNVPEGAYLEFSID
NIPHSMEYDILIRYEPQLPDQWEEVLMTVMRPSVISADSRCANTMPDDDNQMISLHPGSR
YAVLPRPVCFEEGMNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHCKNLEIFTGSEGGD
LATSSAWDTFQRYRCLENSQSVVKTPSTDICRNFIFSVSALLHQGAKACQCDPQGSLSTV
CDASGGQCQCRPNVVGRNCDKCSPATYLFGPSGCRSCDCNPQGSEHVFCHEATGQCACIH
GVYGRQCDHCLPGHWGFPNCRPCTCNGHTEQCDPYSGECLDCREQTTGHNCERCLEGYYG
DPVLGSGDHCRPCMCPDGPGSGRQFAGGCYHGLDSHYQVFCICNPGYRGARCEECAPGYY
GNPHENGGQCQPCQCNNNIDMLDQESCDARTGECLKCLYHTEGRGCHSCKLGYYGDALTQ
NCRKCVCNHLGTNPATCPAVGDCHCDLGSGQCQCLPNVVGQHCDQCAPDTWNMASKRGCE
SCDCDPNHSFGTSCNELSGQCSCKPGFGGKMCQECRELFWGDPEVKCNACDCDPQGIAEQ
QCNKANGHCVCLEGVSGPRCNLCARGSSGTFPYCERCHQCFADWDVIVGQLTNQTHRLVN
KVNTIKASGITGPYKHAIDNMEQSARSIRTILAQNLATQPLSEIQQLLEQATDLMEEMSN
KLNLTEEALAQVSSDDNSTNTKLDSLKEDAQKLDRTVKELLDQVELIKNSDVRGATDSVT
KYYQQSLAAGAQANASTTDPGNPVESSFILRQATEDKMNDTRDEFHRRQEEHSKRLDDLA
DQLETLDLSELSEKTCGSPAGEACADSLCGGLSCVDSEGNRRCGGEGCNGLVTLANNAWH
KAKDFDQEILTAMEEVDKLSKMVSEAKVKADDAKLSAQDVLLKTNKTKQRVDQSNEELRS
LIRQIRDFLTQDAADMESIEAVANEVLAMQMPSTPAQLQNLTDEIRERVRDLAQVETILN
QSADDVQRAENLLKQAGRASKEATDVRETAEMVKQALEEAERAQKAAAEAIKQATTDIKG
TNDLLSSVESETADSEFKLNNATQRLLWLEKDITLLREKAQNTSLSSEQTERDAESINKV
AEQVKKDLESELKDKYSTVQDLIKQEAGGVADAKKRAELLQQEATDLLLQASDKLQLLKD
LEKSYEDNQKTLEDKANQLVDLEKAVKELLQEISHKVTVYSTCLF
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atgttgataattcaaattgcgaccctgctatccgcaggggcgtgcgtccttgcccaggta
ccggagttcagcgatgtgtgcacagaggggagctgctaccccgccacgggagaccttctc
atcggcagagcccaccaactctcctccaactccacatgcggcctccaccggcccgagccg
ttctgtatcgtcagtcatttacaggaagagaagaaatgctttgtgtgtgactccaccgac
gtctatgtcaaaagcatcgttaacgccaccaccggccaccgggtggagaatgtcgtgacc
acattcgcccccaaccgcctgaaaacctggtggcagtcagagaatggtcttgagaaagtg
accatccagctgaacttggaggcagagtttcatttcacccacctcatcatgaccttcaag
accttccggcctgctgccatggtgattgagcggtcggccgactttgggaagaactggcag
gtgtaccgctacttcgcctacgactgtgagtcagcattccctgccatatcatcggggccc
atgcagaaagtggatgacgtcatctgcgattcacattactccgacatcgaaccatcgaca
gagggagaggtcatcttccgagttttggatccagttttccgtattgaagatccctacagc
cccagaatccaaaacatgttgaagatcaccaacctaagggtgaagttcaccaagctgcac
acactgggagacaacctgttggactcccgcatggagatcaaggagaagtactactacgct
gtctacgacttggtggtacggggtaactgcttctgctacggacatgcctccgagtgcgcg
cccgtcgatggggctggggatgttgttgagggaatggtccatggccactgtatgtgcaac
cacaacaccatggggctgaactgtgagaagtgtcaggacttctaccatgacctgccctgg
agaccagccgagggacgcaataccaacgcctgtaaaaaatgtaactgtaaccagcactca
gactcgtgtcacttcgacatggcagtatacgtctccacgggtaacgtgagcggtggtgtg
tgtaatgagtgccagcacaacactatgggacacaactgtgaacagtgcaaacccttctac
ttccagcacccagagagggacgtccgtcaccccagtatctgtgaaccgtgtaactgtgat
ccggtgggctctctgaacggtgggatctgtgacaggatgactgatgtgtcgtctggactg
atcgctggccagtgtcgctgcaagcccaatgtggagggagagcaatgtgaccagtgcaaa
caggcccattacggcttgggagaccaccttctgggctgcatggcctgcacctgtaatgcc
ctggggacagttcctggagggagcccatgtgatacagactcgggagtctgttactgcaaa
cgcctggtcaccgggagggactgtgaccaatgtatgcctcagcactgggggctaagcaat
gacatggatggctgcagaccatgtgactgtgacctgggtggagccatcaacaacgattgt
tcccaggagactggtcagtgtgtgtgtcgagaacacatgtttggccggcgctgtgaccag
gtggagtcaggcttctacttcatcgccctggaccactacacctacgaggcagaggacgcc
aaatttggacctggtgtgacagtagtgcagagaccccaccctcaggaccgtagccccacc
tggacagggataggtttcgtcaatgttcccgagggggcctacctggagttctccatcgac
aacatcccccactccatggagtacgacatcctcatccgctacgagcctcagttaccagac
cagtgggaggaggtgttgatgacggtgatgcggcccagtgtgatttcagctgacagtcgc
tgtgccaacaccatgcctgatgacgacaaccagatgatatccctccaccccggatcacga
tatgcagtgctccccagaccagtgtgtttcgaggaagggatgaactacactgttcgtctg
agtctgcccctctactccgcactcagtgacgtccagtccccatatacactcatcgactcg
attgtgctgatgccccactgtaagaacctggagatcttcacaggctctgagggcggtgac
ttggccaccagcagtgcctgggataccttccagcgctaccgctgtctggagaacagtcag
agcgtagtgaagaccccgtccacagacatctgccgcaactttatcttcagcgtatctgct
ctgctgcaccagggagctaaagcatgccagtgtgacccgcagggctctctcagcacggtg
tgtgatgccagcggcgggcaatgccagtgtcgccccaatgtagtaggcaggaactgtgac
aaatgttcccctgccacctacctgtttggaccaagtggctgcagatcctgtgattgcaat
ccccagggatcggagcatgtattctgccatgaggctactggccagtgtgcttgtatccac
ggggtgtacggccgtcagtgtgaccactgtttgccgggacactggggcttccccaactgt
cgcccctgcacctgcaatggccacactgagcagtgtgacccctactctggagaatgcctg
gactgccgagaacagaccaccgggcacaactgtgagaggtgtctggaaggttactacggc
gaccctgtcctaggttcaggggaccactgtcgtccctgcatgtgtccggacgggccaggt
agcgggcggcagtttgccggtggatgttaccacggtctggactctcactaccaggtgttt
tgtatctgcaaccccggatacagaggtgccagatgtgaggagtgtgccccaggttactat
ggaaatccccatgagaacggcgggcagtgccaaccatgccagtgcaacaacaacattgac
atgctggaccaggagtcctgtgatgccaggacgggtgaatgtctcaaatgtctctaccac
accgagggtcgaggctgccacagctgcaagctgggttactatggagatgccctcacacaa
aattgcagaaagtgtgtgtgtaaccacctgggtaccaacccagccacgtgcccggcggtg
ggcgactgccactgtgatctgggcagcgggcagtgccagtgtctaccaaatgtggtaggt
cagcactgtgaccagtgtgcccccgacacctggaacatggccagcaagaggggctgcgaa
tcttgcgactgtgaccccaaccactcatttggaacgtcctgcaacgagctgagtggccag
tgctcctgtaaacctggctttgggggtaaaatgtgtcaggagtgcagagagctgttctgg
ggagaccctgaagtcaaatgcaatgcatgcgactgtgacccacaaggcattgccgagcag
cagtgcaacaaggccaacggtcactgtgtgtgcttggagggcgtgtctggtccccgctgt
aatctctgcgcccggggctcctctggcaccttcccctactgcgaacgctgccaccagtgc
ttcgccgactgggacgtgatcgtaggtcagctgaccaaccagacccacaggctggtcaac
aaggtgaacaccatcaaggccagcggcatcaccggaccatacaaacacgcgatagataac
atggagcagagcgccaggtccataagaactatcctggcccagaacctggctacacagcca
ctgtcagagatacagcagctactggagcaagccacagatctaatggaagagatgagcaac
aagctgaacctcactgaggaggcgttggcccaagtatcatctgatgacaacagcaccaac
accaaactggactctctcaaagaggacgcccagaaactggatcgcaccgtcaaggagctg
ctggaccaagtggagctcatcaagaactctgatgttcggggagcgacagacagtgtcaca
aagtactaccagcagtctctggctgctggggcccaggccaatgcctccaccaccgaccca
ggcaacccggtggagagctctttcattctacgacaagctacggaggacaagatgaacgac
accagagacgagttccataggaggcaggaagaacactccaagagactggacgacctggcg
gatcagctggagacattggacctatcagaactcagcgagaagacgtgcggcagcccagct
ggtgaggcgtgtgcagactctctgtgcgggggtctgagttgtgtggactctgaggggaac
aggaggtgtgggggtgaggggtgtaacggtctggtcaccctggccaacaatgcctggcat
aaggccaaggactttgaccaggagatcctcacggccatggaggaggtggacaaactctcc
aagatggtgtcagaggccaaggtgaaggcagacgatgccaagctgagtgcccaggacgtg
ctgctgaagacaaacaagaccaagcagcgcgtggaccagagcaatgaggagctgcgcagc
ctcatccgacaaatcagagacttcctcacacaggatgcagcagacatggagagcatcgag
gcagtggccaacgaggtgctggccatgcagatgcccagcacgccagcccagctccagaat
ctgacagacgagatcagggagagggtgcgagacctggcccaagtggagactatcctcaac
cagagtgctgacgatgtgcagagagccgagaacctactgaagcaggcaggcagagccagt
aaagaggccacagatgtgagggaaacagcagagatggtgaagcaggctctggaagaggct
gagcgtgcccagaaagcagcagctgaggccatcaaacaggctaccactgacattaaaggc
acaaacgacctcctgtcctcagtggagtcggagactgcagactcagagttcaagctgaac
aatgccacccagaggctgctgtggttagagaaagacatcacactgctcagagagaaggca
cagaacacctcgcttagctctgaacaaaccgagagagatgcagagagcatcaacaaagtg
gctgagcaggtcaaaaaggacctggagtcggagctgaaggataagtacagcaccgtgcag
gacctgatcaaacaggaggccgggggcgtggccgacgccaagaagagggcggagcttcta
cagcaggaagccacagaccttctgctacaggccagtgacaaattacagctactgaaagat
ttagagaagtcctacgaggacaaccagaagactctggaagacaaggccaaccagttggtg
gatctggagaaggctgtgaaagagctgctgcaggagatcagtcacaaagtcactgtgtac
agcacctgtctgttttaa
DBGET
integrated database retrieval system
