KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112251277
Entry
112251277         CDS       T05605                                 
Name
(RefSeq) ataxin-2-like protein isoform X1
  KO
K23625  ataxin 2/2L
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112251277
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     112251277
SSDB
Motif
Pfam: SM-ATX LsmAD PAM2
Other DBs
NCBI-GeneID: 112251277
NCBI-ProteinID: XP_042177907
LinkDB
Position
LG01:complement(45992202..46025194)
AA seq 989 aa
MSFRRQNQQPGSGGRKTSNGTAGPAALPSHISGSNANRAVPGRTRNTMKPPSQSSPVFEG
VYNNTRMLHYLTAVVGSTCDVRVKSGNVYEGIFKTLSSRCELVVDAVHKRSEGDADGDGG
GGLPPSLPRIEEITDTMIFSPGDLVTMTCRDVDLNYAIRDAFTDTAISSSRVNGEHREKV
LQRWDGGDSNGEGFDLETDTSNGWDASEMFKFNEETYGVTSTYDSSLSMYTVPLERGSSD
GFRQREARAARLANEIEGSPQYRHRTNLENDDKSEEDKYSAVVRERDEGRERGSPGFQSS
AGSRDGKYIPLPQRAREMGVPPSSLRGGASGPIPNRTGVPGSSRPSQGSDRCSPLSIRGA
YSPHQSQASPPGQPSSPTPSSSSHPIPHSISHPQALADTSRSSVNGVSSRTSPKAQRSVQ
TNRTLRNPTSQSSPAVSRSPKPDDPALAGPSYLDTSSSSIASATPKSSGPTPLFTVDVNE
ILSSAAKERTEGPASPQDGKSGKVPSVLQRTQLEELRKFGKEFRLQPSPSSAGPTSSDSA
QPSPSDSATTAESVPAPGHTPSQDPQSGEGSSFTLTPTTPTPSPAPNTASQSSGPDRQTP
QPARSPGSEEEEEEGSERAEGVADQVKKSTLNPNAKEFVFKAPMTLVKPSPAPTPPRPTP
PSPSVVLQPPPGQQAIYSTPYLSYLSPVQIQGHSVQAPQMYQYTMSSVQQGKYPRSKGQV
VGPRPDHHGSSQPQMLQAAASAAGPPLVASPYPQAYLQYSQVIQGMPHYPGQPVYSMLQG
GARMLTQAGHPQAMGPQYPGQTEGPPGPQQAMYASQQFSHHSSSMHPPQPSSTPTGSQPP
PQHTAPSPGHGQSGQGGPQPQSMYHSGPLPAPTPPNMPPGHSSPQASYPMQGYSLPTHQP
MAQHYPGLGQLTQAHVAQGMSGPHHPGGHGPPQMMLHYAPPPQQGPGSAQQHGPPPQQGA
HQHYYIQHPQAVQVQAHPTQQLSFHPPGN
NT seq 2970 nt   +upstreamnt  +downstreamnt
atgtcctttcgtcgacagaaccaacaacccggttcaggcggacgaaaaacctccaatgga
acggcagggcctgccgctttgccctctcatatcagcgggagcaatgccaacagagctgtg
cctggaaggacaagaaatacaatgaagcctccatctcagtcctctcccgtatttgaaggt
gtctacaacaacaccaggatgcttcactatctcacagctgtagtgggctccacctgtgac
gtccgagtgaagagtggaaatgtgtatgaaggcatcttcaagaccctcagctcaaggtgt
gagctggtggttgacgctgtccacaagcggagcgaaggagatgcggatggagatggaggg
ggaggcttgcctccctccctgcccaggatcgaggagatcacagacaccatgattttcagc
cccggcgacctggtcacaatgacttgccgagatgtggacctcaactacgccatcagagat
gctttcacagatacagcaatcagctcatcgcgggtgaacggggaacaccgggagaaggtg
ctgcagaggtgggacggaggggacagcaatggagaaggcttcgacctggagactgacacg
tctaatggctgggatgccagcgaaatgttcaagtttaacgaggagacgtatggcgtcacg
tccacctacgattccagcctctccatgtacactgttccactggaaaggggcagctcggat
ggcttccgacagagggaggcacgtgcggcccgcctagcgaatgagattgagggcagtccc
cagtaccgtcaccgcaccaacctggagaacgacgataagagtgaggaggacaagtacagt
gccgtggtccgagagagagacgaggggagggagaggggcagccctggattccagagcagt
gccgggagcagggacggtaaatatattccgcttccccagagggccagggagatgggcgtc
ccccccagcagcctgaggggaggagcctctggtccaattcccaatcgaacaggagtccct
ggctcctctagaccatcccagggttctgataggtgcagcccgctgtccatcaggggcgcc
tactctccccaccagtcccaagccagccccccgggccagcccagtagccctactccctct
tcttcctctcacccgatccctcactccatctctcacccacaagctctggctgatacctcg
cgctcttctgtcaacggagtgtcgtccagaacttcccccaaagcccagagatccgtacag
accaatcgaactctgcgcaacccaacctcccagtcctcacctgcagtctctcgctctcca
aaaccagacgaccccgctcttgctggcccttcctacctggacacttcctcctcctcgatc
gcctcggcaacacctaagtcctctggccccacccctctgttcactgtggatgtgaatgag
atcctaagctcagcggctaaggagaggacagaaggcccagccagccctcaagacggcaag
agcggcaaagttccctcagtcctgcagagaacacagttggaggagctacggaaatttggc
aaagagttcaggctccagcccagcccctcttctgctggccccacctcctcagactccgcc
cagccctccccatcagactccgccaccacagccgagtccgtacccgcccctggccacacc
ccctcccaggacccccaatctggagaggggtcctccttcaccctgacccccaccacccct
accccctctccagcccccaacaccgcctctcagtcatcaggaccagacagacagacaccc
cagccagccaggtcccctggcagcgaggaggaggaggaggagggcagcgagcgagcagag
ggtgtggctgatcaggtgaagaagtctacgctgaaccccaacgccaaagagttcgtcttc
aaggcacccatgaccctggtgaagccgtccccagcccccacccccccgcggcccactcct
cccagcccctctgtggtgctccagcctcccccgggacaacaggccatctacagcaccccc
tatctgtcctacctctcccccgtacagatacagggacactctgtacaggctcctcaaatg
tatcagtacaccatgtcttcagtccagcaggggaagtatcccagatctaaaggccaggtg
gtaggccctcgtccggaccaccacggctcttcccagccccagatgctccaggctgcagcg
tctgcagcaggccctcccctggtggcctccccctacccccaggcctacctacagtacagt
caggtcatccagggcatgccccactaccccggacagccggtgtactccatgctgcagggt
ggggccaggatgctgacccaggcgggccacccccaggctatgggccctcagtaccccgga
cagacagagggtcccccgggaccacaacaggccatgtatgcctcccagcagttctcccac
cattctagctccatgcaccctccccagccctccagcacccctactgggagccagccccct
ccccagcacactgcccccagccctgggcacggacagtcgggccagggaggcccccagccc
cagtccatgtaccactctgggcccctgccagcgcccacaccccctaacatgccccctggc
cacagctctccccaggcctcttaccccatgcagggctacagcctgcccacccaccagccc
atggcccaacactaccccggcctgggacagctcacacaggcccatgttgcccaaggtatg
tctggccctcaccacccaggaggccacggcccgccccagatgatgctgcactatgctcca
cccccacagcaaggcccaggctcagcccagcagcacggccctcccccccagcagggggcg
caccaacactactacatccaacatccacaggctgtacaggtgcaggctcaccccactcag
cagctctccttccacccccctggaaactga

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