Oncorhynchus tshawytscha (Chinook salmon): 112251426
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Entry
112251426 CDS
T05605
Symbol
hps3
Name
(RefSeq) Hermansky-Pudlak syndrome 3 protein isoform X1
KO
K20190
Hermansky-Pudlak syndrome 3 protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112251426 (hps3)
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
112251426 (hps3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HPS3_C
HPS3_N
Motif
Other DBs
NCBI-GeneID:
112251426
NCBI-ProteinID:
XP_042178471
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All DBs
Position
LG05:82729414..82766702
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AA seq
1086 aa
AA seq
DB search
MVHVYNCHPFASQQIVPTEQEPGLVCCGGGALFVVSAGGCKIEAFQLGEEGCPLICRFAT
MGTVQSILHSEIGDYLVTIEEKNNAPYLRAYTNWRYQAAEKTRVGVRLLGHFLRGSSMRG
APKEQMEIIEIPLFERPLCVACCGVTGDLLVGCPKSLVLFSLKRQALNDKLSILDFERCL
IIHLPGLSPQQVGMDVAICAGYIALQTELEVLVVKLERLPGAAFTQKSADKKPQDHSLVP
QDMITGAEHDNETGCVYTVLYSPEGRREGLAGHRDHDDFFIFPKHQELLGDRAKDCGVKI
SLEWTGMESEARGNLIITYILYRRFAPDFFQDCSVEETHLHSLQFHPVFTSNQEVCVEGG
RGVEPTCLFCFFSLPKTGYLYSVRGGVQMVSAYQYPEKAQQAVLTDLFLHIITKNALQCF
SVRCAAVAARAEDPYIDTTMKACPPITMELCALRIQLFIGLKALCHYRHHIVLLTTADVE
TREDTERTARRVIEYKDHQTLRGIFLAVGIEPSTTPALKRFLAHSFLNRKSPFTKPQNPS
EMGHGWNLYVVNTVPPLQLYNEMVEYSKTYEETNPLSHSRLHLLSEAHLLLRATLLDPRV
GNPVERPQTTGQNLAQALGYNTTRTTDRQELQQAFQESCAQLGDCFSRFDKRDCHLALPY
YKMSGLSLTEVISRNRGLSNSLCGYGKGFLFFLKHSLYEETLELLTEETANEVLDIFGVA
EPSQLPHVIASPSMARASPDCGLAHLERLESIGAPSVPLTLSKAALALRMADLQLYRQHM
DRHTEMLQVYGFIEEAKLLLHGRGDTVVPTLLARHLRDNQDGLLVAAMVALHENDKVKLD
EADLFFQELCGDVSGPQGGPQLLVDFWEALLMASSQEAVIQELLFRLTTVYIDRVTRRDG
RGFKPLKSADDLINWCSHYGSLYPWVSILTPAHVNIIPEDLHKLQSLLCGPTLDASSILP
LLEQLPDEDNAGLSVHVLCATKLGHYESSIERLLDRCPQAIIPYANHELQNNNMALWWQK
LFPELCERTRATQGENTILLAALKETLVVVAMELNPLELLDLLPDDGTVHFFLPHLLECS
QRNLMM
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggttcacgtatacaactgccaccccttcgcgtcccagcaaatcgtgccaaccgagcag
gaaccggggttggtgtgctgtggcgggggtgccctattcgtggtgtccgctggaggatgc
aagatcgaggcttttcaactgggagaagaggggtgtcctctcatctgccgcttcgccact
atggggactgtgcagagcatcctacacagtgagataggggactacctggtgaccatcgag
gagaagaacaacgccccctacctacgcgcctacaccaactggcgctaccaggcggctgag
aagacccgcgttggcgtgcgtctgctcggtcatttcctgcgcggctcgtccatgcgcggg
gctcccaaagagcagatggagatcattgagattccactgtttgagcggcctctgtgtgtg
gcgtgctgtggggtgaccggagacctgctggtggggtgtcctaagagcctggtgctgttc
agtctaaagagacaggccctcaacgacaagctctccatcctggactttgagcgctgtctc
atcatccacctcccgggactgtcgccccaacaggtagggatggatgtggcgatctgtgca
gggtacattgccctgcagacagagctggaggtgctggtggtcaaactggagagacttcct
ggtgctgcttttacccagaagtcagctgacaagaagccccaggaccacagtctggtcccc
caagatatgatcactggagcagaacacgacaacgagacgggttgtgtttacactgtgttg
tattcgccagaggggaggagagagggtctggctggtcaccgtgaccatgatgacttcttc
attttccccaagcaccaagagctcctgggggacagggctaaggactgtggggtcaagatc
tctctggagtggacaggcatggagagtgaggccaggggcaacctcatcatcacctatatc
ttatacaggcgttttgctccagacttcttccaggactgtagtgttgaggagacccacctg
cactccctgcagtttcacccagtgttcaccagcaaccaggaagtatgtgtggaggggggt
agaggggtggagccgacgtgtttgttctgtttcttctcgctgcccaagacgggctatttg
tacagcgtgaggggcggggttcagatggtctcagcctatcagtatccagagaaggcccag
caggccgtcctcactgacctcttcctccacatcatcacaaagaatgctctccagtgcttc
tcagtgaggtgtgcagcagtggcagccagagctgaggacccttacatcgataccaccatg
aaggcctgtcctcccatcaccatggagttgtgtgctctgcgtattcagctgttcattggt
ctgaaggctctgtgtcactaccgacaccacatcgtcctgctgaccactgcagatgtggag
accagggaggacacagagaggaccgcacgcagagtcatagaatacaaagatcaccaaacc
cttagggggattttcctagcagtaggtatagagccttccaccacaccggctctgaagcgt
tttctggcccactccttcctgaacaggaagtcacccttcaccaagccccagaatcccagt
gagatgggtcacggctggaacctgtacgtggtcaacaccgtccccccgctccagctctac
aacgagatggtggagtacagtaagacgtatgaggagaccaaccctctgtctcacagccgt
ctgcacctgctcagtgaagcccacctcctcctgagagccacgctcctggacccccgggtt
ggaaaccctgtagaacggcctcagaccactggtcagaacctagcccaggccctgggatat
aatacaacccgcaccacagacagacaggagctgcagcaggccttccaggagagctgcgcc
cagttaggagactgcttcagcaggtttgacaagcgggactgccacctggccctgccctac
tataagatgtcaggcctgtctctgacagaggtgatctccaggaacaggggtctgtctaac
agcctctgtggctacgggaagggcttcctcttcttcctcaaacactccctctatgaggag
accctggagctgctcactgaggagacggccaacgaggtgctggatatcttcggtgtggcc
gagccgtcccagcttccccatgttatagccagcccttccatggccagagccagccctgac
tgtggcctggcccacctagagcggctggagtccatcggagccccctccgtacccctcacc
ctgtccaaggctgccctggccctgcgcatggcagacctgcagctctacaggcaacacatg
gaccgacacacagagatgctgcaggtgtatgggttcattgaggaagccaagctgctgctg
catggcagaggggatacggtggtacctactctcctggctcgtcacctcagggacaaccag
gacggcctgctggtggcagccatggtggcgctgcacgagaacgacaaggtcaaactggac
gaggctgacctcttcttccaggagctgtgtggggatgtgtcagggccccagggaggccct
cagctgctggttgacttctgggaagccttgctgatggcctcgtcacaggaagccgtcatc
caggagctgctgttccgcctcaccactgtctacatcgatcgcgtcacacgccgagatggc
cgcggattcaaaccgctcaagagcgcagacgacctgattaactggtgttcccactatggt
tcgttgtatccctgggtcagcatcctgactccagctcacgtcaacatcattccagaggac
ctccacaaactacagtccctgctgtgcggtcccaccctggacgcgtcatccatcctgccc
ctgttggagcagctgcctgacgaggacaacgctgggctcagtgtgcacgtgctctgtgcc
accaagctgggtcactacgagagctccatcgagaggttgctagaccgctgtcctcaggcc
atcatcccttatgctaatcatgagctgcagaacaataacatggctctgtggtggcagaag
ctgttccccgagctgtgtgagagaaccagagcaacacagggagagaacaccatcctgctg
gctgcactcaaagaaacgctggtggtggttgccatggagctgaaccccctggagttactg
gacctgttgcctgacgatgggacggtccacttcttcctgcctcacctgctggagtgcagc
cagagaaacctcatgatgtga
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