Oncorhynchus tshawytscha (Chinook salmon): 112251542
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Entry
112251542 CDS
T05605
Symbol
nwd1
Name
(RefSeq) NACHT domain- and WD repeat-containing protein 1
KO
K24734
NACHT domain- and WD repeat-containing protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112251542 (nwd1)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Other domain-containing proteins
WD40 repeat (WDR) domain-containing proteins
112251542 (nwd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
NACHT
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
DUF4062
AAA_16
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
Beta-prop_CAF1B_HIR1
NPHP3_N
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
PEP5_VPS11_N
Beta-prop_NUP159_NUP214
AAA_22
Beta-prop_DCAF4
NPHP3
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_VPS8
WD40_like
AAA_25
Beta-prop_IP5PC_F
AAA
Nucleoporin_N
ATPase_2
Beta-prop_SCAP
Viral_helicase1
AAA_18
Beta-prop_WDR19_2nd
RuvB_N
AAA_11
nSTAND3
AAA_33
AAA_30
NTPase_1
AAA_14
AAA_28
RNA_helicase
AAA_19
cobW
AAA_17
Motif
Other DBs
NCBI-GeneID:
112251542
NCBI-ProteinID:
XP_042178638
LinkDB
All DBs
Position
LG05:48121954..48142907
Genome browser
AA seq
1728 aa
AA seq
DB search
MASPRGALMEVLKGQATEGLKLRSNVVRVFVSSTFTDMSSERNALLDKTYPELQAFCQSL
GLVFEVVDMRWGLQDAIAVDHMTTELCLQEIEACRKVSVGPSFIALLGNRYGHRPIPRVL
PGKQFEVLLSKLPQDQVGLLHQWFRKDNNAVPPVYVLQPITTLLPHYNDLQPERRPLQDD
SVISWRYTEARLLQLLRTAAVQAEKDGDITVEQKHQFFKSVAEHEIEEGLRIPDGDESEP
SAIIFVRELPHLRKKDGPKRLAQYMDVTADGLLDTEAQELLSGLKSRLFAASPGLLNLHS
VELCKGAIEPSCKEHAQYLESLCEQLVSQTKARIARRVGAGSSVEAGEVRTNGARGGDAS
QRKGEEDRGWLLQELSHHMALSAGKCSGVFRGREGLLGKICLAMWEHTNTRHTPLVVHGP
PGVGKTTLLCKLAQEMRGLLDPRAVVVLRLLGTSAESSDLGRVLQSVCFQICSVFSLSPP
TPITAHTSEDLVRFFHGLLAEVSERGDTLLLILDSLDQLPSATQGQNLHWLPKDIPPNVH
LVVSTADTGSPVLANLRRTVEVPGNFFEVEPLSCDQGRVIMNAYMREAQRSLTPEQCEVV
LCSFQLSGNPLHLKLLLDMARRWASYTPVTDLALSSSAQEVMSQLLQALEERHGKQLVGA
ALGYIVSARGSLSEAELRDILSLDDNVLAEVYQYWLPPNHSLIRLPPLLWVRLRHDLGEL
LVEGQANGVTVLNFHHKLLTETVRERYQRSEQQADRHRVLAEYFLGSWSQGRFKAVLLPP
LTTTLDADRKVPPQPLWFAEGVANVKKLQELPYHLLHAGLWEELRQEVIGSSEWLYCKTL
TCGVASVIEDLTLCTKLMDCPETQLIRDTFILLKPTLDFLDGQMGQMGQGGWYRSRVLHV
QLMHVLLGLNLPGFRFSSLWLGTRNIDIILGWVILYQESLLFTLSHQLSHSVLILCFLSK
DPPLFYTEVLARLHSFAEMYPSLIGRLCCQCHDWLSCCPDPILVPKCTFLQPPGGALKMT
LAGFQKGVTALDICPERGILLAGSEDGKVIAWDLNDLEVIQTLVGHTAKVLSVRVIDSGA
HCLSLAADGSLRKWSLLSGRQLYCTQEAVSINSLPSTTHIHVSEERALVFTHSGGQVKVW
HLNTTELLFQVKDSGVSIILGFLNGMVVSLSDGGLVTFSHPSAEDKTAQIHLEKSSHSLT
LTATLTLQKNVRLLIASKEGFLYQVSSTVQGRQSQCTLRQTVTELPVCATFLSASDDERI
LLAGCERTLVLFHRESDCVQSFLDLHHEDTVLCACVSGDSRVVVSGSEDQTIRVWSMTTG
NLLDCFLGMDAPVTTLALYEGTVISASSSAYYLKLWHLPSPNNPQQRPNCCIPAGCPQVA
LTKDGDTVYYVRNVGQKEVITWNCHTGSSTDTMAVSAEVCCLELAQNKKLLFCGLTTGTV
LIYPLAFPKETLCIPPPETLPTVRCMAIGGQEKHMAVAYEDSVCLFEITARDSFPSVDGP
SARFALSLLHSPVSSMALLPDCRLLYGTACGEVTMYDFKSASTATLDGHRSRVNCVTTSN
WGTHALVGSEDAVQRLWGLTPLVLDHTMEYKGFLFEGVLCAAFSESDKHVFTGSQDRTIK
VWDVASGSLLFVQYVYAPVTKMLTYRNGFVAISQLGYVIKEGFRCPDGVCPEYNPLRNVN
AHYRVTSRQKSADSPQGVITEIPEYNPAQFNFMALMLKSKSSHSCQLL
NT seq
5187 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgccaagaggagcactcatggaggttctcaaaggccaggcaactgaaggactg
aagctcaggtccaacgtggtccgagtctttgtcagctccacatttacagatatgagcagt
gaaagaaatgccttattggacaaaacctatcctgaacttcaagctttttgtcagagtctg
ggcttagtgtttgaggttgtggatatgagatggggtctccaggatgcaattgctgtggac
cacatgaccacagaactgtgtcttcaggaaatcgaggcttgcaggaaagtatccgtagga
ccaagtttcattgctctgctggggaaccggtatggccaccgccctatcccccgtgtcctc
ccaggaaaacaatttgaggtgctgctgtccaagctaccacaggaccaggtggggcttctc
caccaatggttcaggaaagacaacaatgctgttccgcctgtctacgttcttcagccaatc
acaactctgttgccccactacaatgaccttcagcctgagagaaggccgctgcaggatgac
agtgtcatttcctggcgctacacagaggctcgattattgcagctcctacgcactgcggcc
gtgcaggctgaaaaagacggggatataacggttgaacaaaaacaccagttcttcaaatct
gtggcggagcatgagatagaggagggtctgcgaattccagatggggacgagagcgagccc
tccgccatcatcttcgtgcgggagctacctcacttgcgtaagaaggacggcccgaagcgg
ctggcccaatacatggatgtgacggctgatggcctgctggataccgaggctcaggaactc
ctctcgggcctcaagtcgcgtctcttcgctgcctcgccgggcttgctcaacctgcacagt
gtggagttgtgcaagggagccatcgagcccagctgcaaggagcatgcacagtacctggag
agcctctgcgagcagctcgtgtcccagacgaaggcccgcattgccaggagggttggtgct
ggttcgtcagtggaggctggtgaagtgaggacgaatggggcaagaggaggagatgcaagt
cagaggaagggggaagaggacagaggttggctgctccaggagcttagtcaccacatggct
ttgagtgccgggaagtgttcaggcgtatttcgcggcagggaggggctccttgggaagatc
tgcctggccatgtgggagcacaccaacacccgccacacgcccctggtggtgcatgggcca
ccaggtgtgggcaagacaacgctgctctgcaagctggcacaggagatgcgtggcctcctg
gaccccagggctgtggtagtgctcaggttgctggggacgtcggcagagagctctgacctg
ggccgtgtcctccagagtgtctgtttccagatctgctctgtgttcagtttgtcacctccc
accccaataacagcacacacgagtgaggacctggtgaggtttttccatggccttctagct
gaggtgtcggagcgaggagacacacttcttctgatactagactcattggaccaattgccc
tcagctacccagggccagaacctccactggctacccaaagacatcccccccaatgtccat
ttggtggtgtccaccgcagatacaggctctccagttttggctaaccttcggagaacagtc
gaggtgccgggaaatttctttgaagtagaacccctatcatgtgaccagggtagagtgatc
atgaatgcctacatgagggaagcgcaacgaagcctgactccagaacagtgtgaagtggta
ctgtgtagctttcagctgagtggaaatcctctgcatctgaagctactgctggacatggcc
aggcgatgggcgtcctatacacccgtgactgacctggccctgagcagtagtgcacaggaa
gtgatgtcacagctactccaggcccttgaggagaggcatgggaagcaactggttggcgca
gctttgggatatattgtttcagctaggggtagtctatcagaggcagagctgcgtgatatc
ttgtcccttgatgacaatgtcctggctgaagtctaccagtactggcttccccccaaccac
tccctcatccgcctcccccctctactgtgggtgcgcctcaggcacgacttgggagaactc
ctcgtggagggacaggccaatggcgtcacggtgctcaacttccaccacaagctgttgact
gaaactgtgcgagagaggtaccagaggtcagagcagcaggctgatagacacagggtcctt
gctgagtacttcttgggtagctggagccaaggccgattcaaagctgtcctcctaccccca
ctgacgaccacattggacgctgaccgcaaggtgccccctcagcctctgtggttcgctgaa
ggagtggcaaatgtcaaaaagctgcaggagctgccctaccacctcctccacgcaggcctc
tgggaggagctgcgccaggaggtcataggcagtagtgagtggctgtactgtaagaccctg
acctgtggcgtggccagtgtcattgaggacctgaccctctgcaccaagctcatggactgc
cccgagactcaactgatccgagacactttcattctcctcaagcccaccctggactttcta
gatggacagatgggtcagatgggtcagggggggtggtatcgtagtcgagtgttacatgtt
caattaatgcacgttctgttgggtttaaatctgcccggtttcaggttctcgtccctctgg
cttggaaccagaaacattgacattatacttggttgggtgatactgtatcaggagagcctt
ctcttcacactgtctcaccaactatctcactctgttctaatactatgtttcctctccaaa
gacccccccctcttctacacagaggtcttggccaggctccactccttcgctgagatgtac
ccttcactgataggacgactctgctgccagtgtcacgactggctctcgtgctgtcccgac
cccatccttgtccccaagtgcaccttccttcagcctccagggggagcgctaaagatgacg
cttgctggtttccagaaaggggtcacagctctggatatttgcccagagagagggatcctg
ctggcaggctcagaggacgggaaggtgattgcctgggacctcaatgatctagaggtcatc
caaaccttagtgggacacacagctaaggtgctatcagtgagagtgattgacagcggcgct
cactgtctctcattggctgctgacgggagtctgaggaagtggagcctgttgagtggcagg
cagctgtactgtacccaggaggcggtgtccattaactccttaccttccaccacacacatc
catgtgtctgaggagagggcgcttgtcttcactcactctggaggccaggtgaaagtatgg
catcttaacacaacagaactactcttccaagtcaaagattccggtgtctccattattctt
ggatttttgaacggaatggtcgtctccctctcagacggaggacttgtcacattttcccac
ccatccgccgaggacaagacagcgcagatacatttggaaaaatcttcacatagtttgacc
ctgacggcaacccttacactgcaaaaaaatgtcagactacttatagcatccaaggagggc
ttcctctatcaggtttccagcacggtacagggcagacagtcacagtgtactctgagacag
acagtcacagagcttccagtctgcgcaaccttcctctctgcctcagatgacgaaaggata
cttttggcaggctgtgagaggacactggtccttttccatagagagtcagactgtgtccag
agcttcctggatctgcaccacgaggacacggtgttgtgtgcctgtgtgtcgggcgacagc
agagtggtcgtctcgggctctgaggaccagactatacgggtgtggtctatgaccacggga
aacctccttgactgtttccttggcatggatgcccctgtcaccactctggctctgtatgag
ggcactgtcatctccgcctcctcctcagcctactacctgaagctgtggcatctgccctca
cccaacaaccctcagcagagacccaattgctgcattccagccgggtgccctcaggttgcc
ctcactaaagatggcgacacggtgtactatgttagaaacgtaggccagaaagaagtgatt
acatggaattgtcacacaggctcttccactgacaccatggccgtctctgctgaggtgtgt
tgcctagagctggcccagaacaaaaaactcctcttctgtggcctcacgactggcacggtc
ctcatctaccccctagccttccccaaagagaccctgtgcatcccacctcctgagaccctg
cccacggtgcgctgcatggccattggcggccaggagaagcacatggccgtggcctacgag
gactcagtgtgtctgttcgagatcacggccagggacagtttccccagcgtggatgggccc
tccgcgaggtttgccctctccctgctccactcgcccgtctcctccatggccctgctccca
gactgtaggctgctgtacggaacggcctgcggggaggtcaccatgtacgacttcaagtcc
gcctcaaccgccaccctggatggccaccgcagcagggtcaactgcgtgacgactagcaac
tgggggacgcacgccctggtgggctcagaggacgccgtgcagaggctgtgggggctgacc
cccctggtgctggatcacaccatggagtacaaggggttcttgtttgaaggggttctctgt
gcagcgttctctgagagtgacaagcacgtcttcactggctcacaggatagaactattaaa
gtctgggatgttgctagtgggagcctgttattcgtccagtacgtctacgctcctgtcacc
aaaatgttgacctacaggaatggctttgtggcaatctctcagctgggctacgtcatcaag
gaaggattccgctgtccggatggcgtctgtccggaatacaacccactccggaacgtcaac
gcacactacagggtcacgtcccggcagaagagtgcagacagccctcaaggcgtcatcaca
gagatccctgagtacaatcccgctcagtttaacttcatggccctgatgctcaagagcaaa
tcctctcactcatgccaactgttgtaa
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integrated database retrieval system
