Oncorhynchus tshawytscha (Chinook salmon): 112251545
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Entry
112251545 CDS
T05605
Name
(RefSeq) thrombospondin-4
KO
K04659
thrombospondin 2/3/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112251545
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112251545
09144 Cellular community - eukaryotes
04510 Focal adhesion
112251545
09142 Cell motility
04820 Cytoskeleton in muscle cells
112251545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112251545
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112251545
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112251545
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112251545
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112251545
Exosomal proteins of colorectal cancer cells
112251545
Exosomal proteins of bladder cancer cells
112251545
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112251545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_3
EGF_CA
EGF
Motif
Other DBs
NCBI-GeneID:
112251545
NCBI-ProteinID:
XP_024278295
LinkDB
All DBs
Position
LG05:complement(49606339..49621815)
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AA seq
627 aa
AA seq
DB search
MGVRCINTSPGFRCGPCPTGYTGPRVQGIGLSYATNNKQVCKDINECDGPKNGGCMENSN
CVNTPGSFKCGSCKAGYVGDQRKGCKPERACGNGQLNPCHASGECIVQRDGKIECQCGVG
WAGNGYFCSSDIDIDGFPDEKLECTERNCAKDNCLTVPNSGQEDVDKDGKGDACDEDADG
DGILNTQDNCVLVPNVNQRNVDEDDFGDACDNCRMIKNNDQKDTDVDRLGDECDEDIDGD
RIPNNLDNCKRVPNANQKDRDGDKVGDACDSCPYVQNPDQLDMDNDLIGDPCDTNKDSDG
DGHQDSQDNCPAVINSSQLDTDKDGLGDECDNDDDDDGIPDLLPPGPDNCRLIPNPLQED
SDGDGVGNVCENDFDNDTIIDSIDVCPENAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVL
DQGREIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTVTDDDYAGFIFGYQDSSSFYVVMW
KQVEQIYWQANPFRAVAEPGIQLKAVKSNTGPGENLRNSLWHTGDTSDQVKLLWKDVRNV
GWKDKTSYRWFLQHRPQDGYIRVRFFEGPQIVADTGIIIDTTMRGGRLGVFCFSQENIIW
ANLRYRCNDTTLENFDSYQVQPVQLQF
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgcgctgcatcaacacctctccagggttccgctgtggcccctgtcccactggc
tacaccggcccccgggtgcagggaataggcctctcctacgccactaacaacaaacaggtc
tgtaaggacatcaatgagtgcgatggacccaagaatggaggttgtatggaaaattccaac
tgtgtgaacacacctggctcgtttaagtgtggctcctgtaaggcaggctatgtgggggat
cagcgcaagggctgtaagcctgagagagcgtgtggtaatggccagctcaacccctgccat
gccagcggagagtgcattgtccaacgagatgggaaaatagagtgtcagtgtggggtggga
tgggctggcaatggctacttctgcagctctgacattgacattgatggcttccctgatgag
aaactggaatgcaccgagaggaactgtgccaaggacaactgtctaacagtacccaactct
ggccaagaggatgtagacaaggatggcaaaggagatgcctgtgatgaggatgcagatggc
gatggaatcctaaatacacaggacaactgtgtgctggtaccaaatgtcaaccaaagaaat
gtggacgaagatgactttggagacgcctgtgacaactgccgtatgatcaaaaacaacgac
cagaaagacactgatgttgatagactgggtgacgaatgtgacgaagacattgatggcgac
agaatccccaataatctggacaactgcaaaagggttcccaatgctaaccagaaggatcga
gatggggacaaagtcggagatgcttgtgacagttgcccctatgttcaaaaccctgaccag
ttggatatggacaacgatttgatcggagacccttgtgacaccaataaggacagtgatggt
gacggtcaccaggactctcaggacaactgccctgcagtcatcaacagctcccagctggac
acggacaaggacggcctgggggacgagtgtgacaatgacgatgatgatgatggtattcct
gaccttctgcccccgggaccggacaactgtcgcctcattcccaaccctctgcaggaggac
tctgacggtgatggtgttgggaatgtgtgtgagaacgactttgacaacgacaccatcatc
gacagcatcgatgtgtgcccggagaacgccgaggtcactctcacagacttcagggcctac
cagacagtggtgctggacccagagggagacgcacagatagaccctaactgggtggtgctc
gatcagggaagagagatcgtccaaactatgaacagtgaccctggactggctgttggttac
acagctttcaacggtgttgacttcgaagggactttccatgtgaataccgtaacggacgac
gactatgcagggttcatctttggctaccaggactcttcctccttctacgtggtgatgtgg
aaacaggttgagcaaatctattggcaggccaatccattcagagctgtggcagaaccaggg
atccaactgaaggctgtgaagtccaacacgggaccaggggagaatctacgcaactccctg
tggcacactggcgacaccagtgaccaggtgaagctgctgtggaaagacgtccgcaacgtg
ggctggaaggacaagacttcctaccgctggttcttgcaacacaggccccaagatggctac
atcagagtgcgtttctttgagggtcctcagatagtggcagacacaggtatcatcatagac
accaccatgagaggaggcagactgggtgtcttctgcttttcccaggagaacataatctgg
gctaacctacgctatcgctgcaatgatacaaccctcgagaactttgactcataccaagtc
caacccgttcagctacagttctaa
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