Oncorhynchus tshawytscha (Chinook salmon): 112251650
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Entry
112251650 CDS
T05605
Symbol
ushbp1
Name
(RefSeq) colorectal mutant cancer protein isoform X1
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
otw03037
]
112251650 (ushbp1)
Cilium and associated proteins [BR:
otw03037
]
Primary cilia and associated proteins
USH complex and associated proteins
112251650 (ushbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
DUF2089
FAP206
Metal_resist
Motif
Other DBs
NCBI-GeneID:
112251650
NCBI-ProteinID:
XP_042178430
LinkDB
All DBs
Position
LG05:81478170..81508852
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AA seq
749 aa
AA seq
DB search
MEAMEEFKRGRSDTLDIQSEGEEMTPVTLVTTMTPDTEVNSEPSQAELAQCEAEVGTLLS
IIAELNRKMGALQAPSDPDDLKPQEPVILPPAPASLSSPPPSLCNPEKHTGTASKAPVTN
REGSGEVWSELQGVMSVLEGSINTRRAWAASHTACGQDGQMEHLTAARDSWVQVTQVLEE
MEREFGISYPSGLPPEERQQYQKDILALHQRNCDLRSSLQSRQEELEGAKVTVGDIEVER
NSLHERLLGLHKAWRSGSLSPPYSSSGSSSGVVLSPGWASPGSPGSPSFLGSPPFPGSPL
FLRRPIAMGIFPALSTGGDISSSASPSPSPWPGSVPQGSPCRSPSPSISLEGETDRLQRC
IERLKARNERLTAALDKRKGESELISMTLSRHEADSTALQMALQYCEECEEAYSELLSVY
EGRRQQVIPHWRHIAGPVMESQQPNSPRPSLRSLRTEELSTSFSTPGGAVETETHIQTRF
HLYYTARGSEVEGCEADIRERIERLKQDRAAVCVPKPGPGGEGNLSPDTGTLAGLRGTRG
GQGAQDTSNPQSTKREKAVLLYDLVTVREEMSELRGLIRLTEKERRCLDWSLMAQKAQDA
AGALISESLAEEIEDRRTEQQRTSENEDKLSSDGDIPGPQNRAILRELQAVLQREQVLKR
RVSAVRESLDLVLSDSASRRRGNDEQMARLTQAHSKATGSYRNARRKYREKLWRLESQVS
AMSDRHMTQIGALKATLEAMECRREETVL
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggaagccatggaggagttcaaacgagggagatctgatactctggacatacagtcagag
ggtgaggagatgaccccggttaccctggtaaccacaatgacccctgacaccgaggtgaac
tctgagccttcccaggcagagctggctcagtgtgaggcggaggtcggaactctactcagc
atcattgctgaactcaacaggaaaatgggcgcattacaagcaccaagtgatccagatgac
cttaaaccacaggagccagtcatcctccctccggctccagcctccctgtccagcccccct
ccatccctctgcaacccagagaaacacactggcaccgcatctaaagccccagtaaccaac
agagagggtagtggtgaagtatggtcagaactccagggagtcatgtctgttctggagggt
tccattaacaccaggagggcctgggctgcctctcacactgcctgtgggcaggacggacag
atggaacacctcacagccgccagggacagctgggtacaagtcacacaggtcttagaggag
atggagagagagtttgggatctcgtacccgtctggtctgccccccgaggagcgtcagcaa
taccagaaggacatcctggcacttcaccagcggaactgtgacctgcgcagcagcctacaa
agcagacaggaagaactagagggggcaaaggtcacggtgggagacatagaggttgagagg
aacagtctacatgagaggttactgggcctccataaggcgtggcgatcaggcagcctctct
cctccctacagctcctcagggagctccagtggtgtggttctgagtcctggctgggcctcc
cctggttcccctggttccccttcattccttggctctcctcccttccccgggtcacctctg
ttcctcagaagacccatcgccatggggatcttcccggccctctctactgggggggacata
tcctcctcggcctctccatcaccctccccctggcctgggagtgtcccacaaggcagcccc
tgtcgtagccccagccccagcatcagcctggagggtgagacagacagactacagaggtgt
atagaaaggctgaaggcccggaacgagcgtctgactgcagctctggacaagagaaaggga
gagtctgagctgatcagtatgacgctcagcagacacgaagctgacagcacagccctgcag
atggctctccaatactgcgaggagtgcgaggaggcctacagtgagttactgtctgtgtac
gagggcaggagacagcaggtcataccacactggagacacatagcaggcccggtcatggag
agtcagcagcccaacagtcccaggccgtcccttaggagtctaagaactgaggagttgtca
acctccttctcaacaccagggggtgctgttgagacagaaacacacatccagaccaggttc
catctctattatacagccagggggtccgaggtagaggggtgcgaggcggacattcgggag
cgtatcgagcggttgaagcaggacagggcagcagtgtgtgtccctaagccagggcctggg
ggagaggggaatcttagcccagatacaggcaccctggctgggctcagagggacccgtgga
ggacaaggggcccaggacacctccaacccccagagcaccaagagagagaaggctgttctg
ctctatgacctggtcactgtcagggaggagatgtcggagctgcgaggtttaatccgtctg
acggagaaggagcggaggtgtctggactggagtctaatggcccagaaggcccaggatgca
gctggagccctgatctctgagagcctcgctgaggagatagaggacaggaggacagaacag
cagaggacttctgagaacgaggataagctaagcagcgatggagacatccctgggcctcaa
aaccgtgccatccttcgagagctacaggctgtcctgcaacgggagcaggtgctgaagagg
agagtgtcagcggtgagggagtctctggacttggttctctccgacagcgcctctcgcagg
agaggcaacgatgagcagatggctcggctcacacaagctcacagcaaggccacagggtcg
taccggaacgctcgcaggaagtacagggagaagctgtggaggctggagagtcaggtgtca
gcaatgtcagatcgtcacatgacccagatcggggccctgaaggccacgctggaggccatg
gagtgcaggagggaggagactgtactctga
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