Oncorhynchus tshawytscha (Chinook salmon): 112251656
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Entry
112251656 CDS
T05605
Name
(RefSeq) rho guanine nucleotide exchange factor 18 isoform X1
KO
K21066
A-kinase anchor protein 18
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112251656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112251656
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112251656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
PH
C1_1
PH_13
C1_2
Motif
Other DBs
NCBI-GeneID:
112251656
NCBI-ProteinID:
XP_042178482
LinkDB
All DBs
Position
LG05:complement(83074478..83187996)
Genome browser
AA seq
1589 aa
AA seq
DB search
MADSPLNNSWPSFSKLWMKRWSFKRGSEGKPCSTLQPCVSASEASSLSSSLSPASVAKDV
FFNIATEEKDDESDYENPSLDEDVDSSVEDLLGLSCSFIDSNYYKDHKGVHSVSAAPETS
PSTLGFPIRYRDSPQHSSQLHPNPHPYQETENKSIPHHTIVVTQFNPNMLQSGSAMDGYN
SESVDPVDPVGVVSTMVNLNGPGGQGDMMDSDRESFPILIRSMSTSRRHSLGMPMSPIDL
GRRLSLDAIDSDGERDDALLCSSHLQAFIYPGCPEQEVEKSDGTDLSRSEAKETETEECS
RSGRTYSRTEILATDEHIHVAHVSHVVETSKRAAGEELDPEEPNLHTAEGQTHIARQRTT
RPEGKETGSSVTWYEFLSNENEEEEDRTEKVEKGTKVKRTLSSLRSRMTGSFNKDKQGKN
REKEQQKGKERELKEKEKLHHSSSSGHNLVPGSFSSCATCSLCSKALQKKHGLQCLNCAV
NVHKSCRTLLAECNSSKNKKDSLHRTSTTASPNLALRDRDQSSTALDCPSGSPRIPGMTL
TPRGPSAQPASAAFNSSSSSHTAAASLNHSHNSQTGSLSGDMDEPDSLRSGLKRFNEDAV
SLAPSTTDSIVVEDAYYSAFRADLESDAQDLEVESWSLAVDQHYLKKYTKETVKRQDVIY
ELMQTEMHHVRTLKIMLRVYMRELKEHLQMDELFPRLESLLELHTSFLSRLKERRRDSAQ
PGSDRNYNIQRLADILTTQFSGEKGDRMKENYGDFCSHHTEAVSYYKEQLHNNKKFQNLI
RKVNNLSVVRRLGVTECILLVTQRITKYPVLVERIVQNTEVGTEEHEELTRSLSLIKDCI
VQVDAMVNLHEKASRLRDIAHKMEPKSLGKIKDGRVFHREDLSQGRRRLLHEGTANHKAA
SGRLKDIVAVLLSDVLLLLQDKDQRYVFSTVDNKPSVISLQKLIVREVAHEERAMFLICA
SSNEPEMYEIHTASKEERNSWMTHIRQAVESCPHTEERLFSEQEEARAARFNEFQERLSQ
KDSQIVTLLTEKLQLFSDMCLVSGHEDTTFRSRLMLRGDASDLHQGETLLKGTITDVESL
QNLLLSGVREPASRLEEGSGSGALPRRADTFGGYDSRPIILNKKGIVKKKNHSGGDRARD
ETQKGCSDPQLTKIQASQQTLEQPQADDDDEEEEEASPATWNPIWSNTFPEAEFFDRVLM
LSQRLYSLQAIIAKQDSHIELQRASLTERASFPGRHRGNVLLEQEKQRTLALQREELASF
HKLQSQHRQEQARWERERERHRLQAEVTEGMLRQREDDCRRLEEKLAEERDDLERQRETY
QQDLERLRESTRTVEKEKERLEQQRKIKRKTIEVMPFSGSLNGDLLLGVGVGSSCSVGSD
LSLTLPQKALVRSSPSVAPADYLERPEVLARGQSANATALPVKKEVPLHLCSTTNQQHKQ
VGVQQQIPTKLAALSSKSSKSAKATHRTDSTASLDMKQMLPMKLSAKEDGTLKAKRSISP
NQQLPHTLVHSQSMHLTVSSSLPDKGPENQPASLQKPPSQASNPLHIHTQPQAPNPLHTQ
SPNAPPAQAPVHSHSLPPPCRIPEDVIFF
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atggcagattctcccttaaacaactcctggccttctttctccaaactctggatgaaacgt
tggtccttcaagagaggatcagaaggtaagccatgttctaccctgcagccctgtgtgagt
gcctcagaggcatcctccttgtcctcgtccctgtccccagcctccgtcgctaaggacgtc
ttcttcaacatcgccactgaggaaaaggatgatgaaagtgactatgagaacccaagcctg
gatgaggatgtagacagcagtgtggaggatctgctgggtttaagctgctccttcatagac
tcaaactattacaaagaccataaaggggtacactctgtatcggctgccccagaaaccagc
ccttctaccctgggctttcccattagatatagagacagtccccagcacagctcccagctc
catcccaatccacatccctatcaagagactgaaaacaaatccataccccatcacactatt
gtggtcacccagttcaaccctaacatgttgcagtcaggcagtgccatggatggctataac
agtgagtcggtggaccctgtggaccctgtgggtgtggtgagcactatggtgaatctgaat
ggaccaggaggacaaggagacatgatggattctgacagagagagcttccctatcctgatc
aggtccatgtctacatcacgcagacacagcttgggcatgcccatgtctcccatcgacttg
gggaggaggctgagcctggacgccatagacagcgatggagagagggatgacgctctcctc
tgctcctcccacctacaggcttttatatacccaggatgccctgagcaggaagtggagaag
tcagatgggacagacctctccagatctgaagccaaggagacagaaacggaggagtgcagt
cggtctggaaggacatactccagaacagagattctggccacagatgagcacattcacgtc
gcacacgtgtctcacgtagtggagacatcgaagagggcagcaggagaggagctggaccca
gaggaacccaacttgcacactgcagaaggacagactcatatagccaggcagaggaccaca
aggccagaggggaaggagactggaagtagtgtcacctggtatgaatttctctccaacgaa
aatgaggaagaagaggaccgaacagagaaagtggaaaaggggaccaaagtgaagcgcacc
ctgagctcgcttaggagcagaatgactggctcattcaacaaagacaagcagggtaagaac
cgagagaaagagcagcagaaggggaaggagagggaactcaaagagaaagagaaactgcat
cacagtagtagcagtggacataatttggtgccaggctccttctccagctgtgccacctgc
tcactgtgcagtaaggccctgcagaaaaagcatggtctgcagtgcctgaactgtgcagtg
aacgttcacaagagttgtcggacgctactagctgagtgtaacagcagcaagaacaagaag
gattctctgcataggacctccacaacagcgtcgccgaacctcgccctgagggatcgggac
cagtcttctacggcccttgattgcccctccggttctccgcgcatcccaggcatgaccctc
accccgcggggacccagtgctcagcctgcctcagccgccttcaacagctcttcctccagc
catactgctgcagccagcctcaaccacagccacaacagccaaaccggatccctctcaggg
gacatggacgaaccggacagcctacgctccgggctcaagcgcttcaatgaggacgccgtc
tccctggccccatccaccactgactccatcgttgtagaagatgcgtactactctgcattt
cgagctgatctggagtctgatgcccaggacctggaggtggagtcatggagtctggctgtg
gaccagcactacctgaagaaatacaccaaggagacggtcaagagacaagacgttatctac
gagctgatgcagacagagatgcaccacgtacggaccctgaagatcatgctgcgtgtttac
atgagggagctgaaggagcacctccagatggacgagctgttcccgcgcctagagagcctg
ctggagctacacacaagcttcctgtcccgcttaaaagagcggcgccgagactccgcgcag
cccggcagcgacaggaactacaacatacagagactcgctgacatcctcaccacacagttt
tcaggtgagaaaggggatcggatgaaggagaactatggtgatttctgcagccaccacacc
gaggctgtcagctactacaaggagcaactacacaacaacaagaagttccagaacctcata
cggaaagtcaataatttgtctgttgtgagaagattgggagtgactgagtgtatcctcctg
gtgacacaacgcatcaccaagtaccctgtgctggtggaacgtattgtgcagaatacagaa
gtgggtacggaggaacacgaggagttgaccaggtctcttagtctgattaaagactgcatc
gtccaggtggatgccatggtcaacctgcatgagaaggcctcgcgactccgagacatcgcc
cacaagatggagcccaagtccctcggcaagatcaaagatggccgtgtgttccacagagag
gacctgtcccagggtcgacgcaggctgctgcatgaggggacggccaaccacaaggccgcc
tccggcagactcaaagatattgtggctgtgctgctgtccgacgtgcttctgttactccaa
gacaaggaccagagatatgttttctccacagtggacaacaagccctcagtgatctccctc
cagaagttgatagtaagggaggtggcccacgaggagagggccatgttcctgatctgcgcc
tcctccaatgagccggagatgtacgagatccacaccgcctccaaggaggagcgcaactcc
tggatgacacacatccggcaggccgtggagagttgtccacacactgaggagagactcttc
agtgagcaggaggaggctcgagccgccagattcaacgagttccaagagcgtctgagccag
aaggactcccagatcgtgacgttgctgacagagaagctgcagctgttttcagacatgtgt
ctggtgtctggtcacgaggatacgacctttcgctcccgcctaatgctgcgaggtgacgcc
tcagacctccaccagggggagacactgctcaaggggaccatcactgatgtggagagtctt
cagaacctgttgctgtctggtgtgagagagccagcttctcgtctagaggagggttcagga
tccggggctctgcccaggagagcagacaccttcgggggctatgacagcaggcccatcatc
ctcaacaagaaaggcattgtgaagaagaagaaccacagtggaggggacagggccagagac
gagacccagaaaggctgctctgacccccagcttacaaagatccaggctagtcagcagacc
ttggagcagccacaggcggatgatgatgatgaggaggaggaagaggcctctccagccacc
tggaaccccatctggtctaacaccttccccgaggctgagttctttgaccgggtgctgatg
ctgtcccagagactctacagcctgcaggccatcatcgccaagcaggacagccacatcgag
ctacaacgcgcctccctcaccgagcgcgcctccttccctggccgtcaccgcggcaacgtt
ctcctggagcaggagaaacagaggacgctggccctgcagagggaggagctggccagcttc
cacaagctgcagtcacagcaccgtcaggagcaggctcgctgggagagggagcgggagcgc
caccggctgcaggccgaggtcacagaagggatgctgaggcagagagaggacgactgcagg
aggctggaggagaagctggcggaagagagggatgacctggagagacagagagagacgtac
caacaggatctggagagactgagggagtcgacccgcacagtggagaaggagaaggaacgc
ctggagcagcagaggaagatcaagaggaagaccattgaggtgatgcccttctctggcagt
ctaaatggggatctccttctgggcgtgggcgtgggcagtagctgcagcgtcggatcagac
ctctccctcaccctcccccagaaggccctggttcgttccagcccttctgtggcgcccgca
gactacctggagcgtcctgaggttctggctcggggccagagcgccaacgccacggcgctg
ccggtgaagaaggaggtgcccctccacctgtgcagcaccaccaaccagcagcacaagcag
gtgggtgtccagcagcagatccccaccaagctggcagccctgagctcaaagagttcgaag
agtgccaaggccacccaccgcaccgacagcacagcctctctggatatgaagcaaatgctg
cctatgaagttgtcagccaaagaggacggcactctgaaagccaagcgctccatcagccct
aaccagcagcttcctcacaccctagtccactcccagtccatgcacttgacagtttcatcg
agccttccagacaaggggccagagaaccagcccgccagcctacagaagccccccagccag
gcctccaaccccctgcacattcacacccagccccaggctcctaaccccctccatacccag
agccctaacgcccctccagcacaagcccctgtccacagccacagcctgccccctccatgc
aggatccctgaggatgtaatcttcttctga
DBGET
integrated database retrieval system
