Oncorhynchus tshawytscha (Chinook salmon): 112251657
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Entry
112251657 CDS
T05605
Symbol
rxrgb
Name
(RefSeq) retinoic acid receptor RXR-gamma-B isoform X1
KO
K08526
retinoid X receptor gamma
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03320
PPAR signaling pathway
otw04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
112251657 (rxrgb)
03320 PPAR signaling pathway
112251657 (rxrgb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112251657 (rxrgb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112251657 (rxrgb)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
112251657 (rxrgb)
Nuclear receptors [BR:
otw03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
112251657 (rxrgb)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
112251657
NCBI-ProteinID:
XP_042178495
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Position
LG05:83658668..83740616
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AA seq
461 aa
AA seq
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MWHPMASASSGSPIRELGYMHYSQGPMSMPHSHGPPMGGMVGHPSVISTSRTLPSPMSTL
GAPMNGLASPYSVITSSLGAPSTPGINFGSLHSPQMREMNSVSSSEDIKPPPGLLNLGDI
NYNCTSPGGMSKHVCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKECLID
KRQRNRCQYCRYQKCLAMGMKREGVSVQEERQRGRERGENEVESTTSFNEEMPVDKILDA
ELAVEPKTETSADEGPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILL
RAGWNELLIASFSHRSVTVKDGILLATGLHVQRSSAHSAGVGSIFDRVLTELVSKMKDMQ
MDKTELGCLRAIVLFNPDAKGLSNSPEVEGLREKVYASLESYTKAKYPDQPGRFAKLLLR
LPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaccctatggcatcagcctcatctggaagccccataagggagctgggttatatg
cactattcccaagggccgatgagcatgccccactcccatggccctccaatgggtggcatg
gtggggcacccctctgtcatcagcacctccaggacccttccatccccaatgagcaccctg
ggcgcgcccatgaacggcctggcgtcgccctactccgtcatcacgtcctccctgggcgcg
ccctccacgccagggatcaacttcggatcgctccacagtccacagatgagagagatgaac
agtgtcagtagttctgaggacatcaagcctcccccgggtctcctgaatctaggggacatc
aactacaactgcaccagccctggaggcatgtccaaacacgtatgtgccatctgtggagac
cgatcatcagggaagcactatggcgtgtacagctgtgaaggctgcaaaggcttcttcaag
agaaccatccggaaagacctcacctatacgtgtcgagacagcaaggagtgcctgatagac
aaacgacagcgcaaccgctgtcaatactgtcgctaccagaagtgcctagccatgggcatg
aagagagaaggtgtgtcggtgcaggaggagaggcaacggggaagggaacgaggggagaac
gaggtggagtccaccactagttttaatgaggagatgcccgtcgataagattctggatgca
gagcttgccgtggaacccaagacagagacatcagcagacgaaggccctggcaactcgaca
aacgacccagtcaccaacatctgccaggcagcagacaaacagctgttcaccctggtggag
tgggccaagaggattcctcacttctcagagctgcccttagacgaccaggttattctacta
cgagcaggctggaatgagctcctcatcgcgtccttctcacaccgctctgtcacggtgaaa
gacggaatcctattggccacgggtctccacgtccagagaagtagtgctcacagtgccgga
gtgggctccatctttgacagagtcctgacagagttggtgtctaagatgaaagacatgcag
atggacaagacagagctgggctgcctacgagccatcgtcctcttcaacccagatgcaaaa
ggcctgtcaaattcaccagaggtggaagggctgagggagaaggtctacgcctcgctggag
tcctacaccaaagccaagtacccagaccaacccggcaggtttgctaaactgttgctgcgt
ctccccgccctgcgctccataggcctcaagtgtttggagcacctgtttttcttcaagctg
ataggagacacgcccatagacacctttctcatggagatgctcgaagcgccacaccaaatc
acatga
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