Oncorhynchus tshawytscha (Chinook salmon): 112251745
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Entry
112251745 CDS
T05605
Symbol
ptchd4
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112251745 (ptchd4)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Other domain-containing proteins
Patched domain-containing proteins
112251745 (ptchd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
112251745
NCBI-ProteinID:
XP_024278464
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All DBs
Position
LG05:25383826..25416082
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AA seq
920 aa
AA seq
DB search
MCFIGRSWASASWIWRRMLRQMIHRGLKASFYWLGLFVSRHPVFFLTVPAVLTIIFGSTV
LSRFKPETDIEILVAPTHSFAKVERSLANSLFPIDQSKNKLYSDLHTPGRYGRLILLAKS
GGNILELADQVLQVHKQVLDLRVNYKGFNYTFAHLCVLSHQDKRCLLDDIITIFEDIRLA
ILSNHTFSKVPVTYPNTTLKDGRVSFIGHQLGGVAFSPNSRDQQVKFARAIQITYYLRNH
GPVVQDVIAEKWENAFCTLITRLSTLSEDLHIQSLTSFSLWRDFHQTGVLAKGEVLVSLV
LLLLAATISSSMRDCLRGKPFLGLLGVLTIAIANVTSTGIFFISDGKFNSTLLGIPFFSM
GHGTKGVFELLAGWRRTRESLPFKERVADAFADVMVCYTMTSSLYIITFGMGASPFTNIE
SVKIFCQSMCVAVLVNYFYVFSFYGSCLVFAGQLEQNRYHSVFCCKIPSVEYLDRQPTWF
KTMMSDGHDHVTHHEVVPYHNHFIQHFLREHYTEWITNTYVKPFVVILYLIYASFSFMGC
LQISDGSNIVNLLASNTPSVSYATTQQKYFSNYSPVIGFYIYEPIEYWNSTVQEHLTTLS
HGFNKISWMDNYFQYLKVVNVSASTKSDFITILQGSFLRSPEYQHFMEDIILSKTDGDEM
EIIASRMYLVARTTEKTREEVVELLERLRPLSLINNIKFIVFNPTFVYMDRYSSSVVSPI
LTSAFSVLTILILTFFLVINPLGNFWLILTVTSVELGVLGLMTLWNVHMDSISILCLIYT
LNFAMDHCAPHLYTFVLATEHTRTQCIKISLEEHGAAILQNACCFVIGMLPLVFVPSNLT
YTLFKCSLLTAGCTVLHCFVILPVFLTFFPPSKKRHKKKKRAKRKEREREREMMERERVR
EREEIECIEVRENPDHVTNV
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttcataggaagaagctgggcatctgcaagctggatctggaggaggatgctgcgg
caaatgatacacagagggctcaaagcttctttctactggctgggcttatttgttagtagg
catccggtttttttcctcaccgttcccgcagtcttaaccatcattttcggatctaccgtc
ctgagcagattcaagcccgaaacggacatcgagatactggttgccccgacacacagcttt
gctaaagtagagcggagtcttgcgaacagccttttccccatcgaccagtcaaaaaacaag
ctgtattccgacctgcacacccccggcagatatggcagactgattctgctggccaagtct
gggggaaatatactggagctcgccgaccaggtcctgcaggttcacaagcaggtgttggat
ttgcgggttaattacaagggattcaattacactttcgctcatctctgtgtcctgagccat
caggataagcgatgcctcttggatgatataattacgatattcgaagatatccgcttagcc
attctatcgaatcacactttttcaaaggtgcccgtgacctatccaaataccacattaaag
gatggtcgtgtgtccttcatcggccaccagctgggtggagtggccttctcgcccaacagc
cgagaccagcaggtgaagtttgcccgggccatccagatcacctactaccttcgcaaccat
ggccccgtggtgcaggatgtcatcgcagagaagtgggagaatgccttctgcaccctcatc
acacgcctgtccacgctcagcgaggacctgcacatccagtctctcacctccttcagcctg
tggagggacttccaccagacgggagtgctggccaaaggggaggtgctggtcagcctagtg
ctccttctgctggcggccactatctccagctcaatgagggactgcctgaggggaaagccc
ttcctgggtctgctgggtgtgctcacaatagccatcgccaacgtgacctccactggcatc
ttcttcatctccgacgggaagtttaactccacgctgctggggatcccattcttctccatg
ggtcatggaaccaaaggagtgtttgagctcctggcgggctggcgaagaactcgagaaagc
cttcccttcaaggaacgcgtggcagacgccttcgccgacgtgatggtgtgctataccatg
accagttccctctacatcatcaccttcggcatgggtgccagtcccttcaccaacattgag
tcggtgaagatcttctgccagagcatgtgcgtggccgtcctggtcaactacttctatgtg
ttctccttctacggttcctgcttggtgttcgctggtcagctggagcagaaccgctaccac
agtgtgttctgctgtaagatcccctcagtggagtacctggaccgtcagcccacctggttc
aagaccatgatgagcgacggccatgaccatgtcacgcaccacgaggtcgtgccctaccac
aaccacttcatccagcacttcctgagggagcattacacggagtggatcaccaacacctat
gtcaagcccttcgtggtcatcctctacctgatctacgcctccttctccttcatgggatgt
ttacaaatcagtgatggatccaacatcgtcaacctcctagccagcaacacgcccagtgtg
tcctatgccacgacccagcagaagtacttcagtaactacagccctgtgatcggcttctac
atctatgagcccattgagtactggaactccacggtgcaggagcacctcacaacgctgagc
cacggcttcaacaagatctcctggatggataactactttcagtatctgaaggtggtgaat
gtgagcgcctcgaccaaaagtgatttcatcaccatcctgcagggctccttcctgcgcagc
ccggagtatcagcacttcatggaggacatcattctgtccaagacagatggggatgaaatg
gagatcatcgcgtccaggatgtacctggtggcgcggaccacagagaagacacgggaggag
gtggtagaactgctggagaggctccgccccctttcgctcatcaacaatatcaagttcatc
gtcttcaaccccaccttcgtctacatggaccgttacagctcctctgtggtctcacccatc
ctcacatcggccttcagcgtgctcaccatcctcatcctcaccttcttcctggtcatcaac
cctctggggaacttctggttgatcctgaccgtcacctccgtagagctgggggtcctgggc
ctcatgaccctctggaatgtacacatggacagcatctctatcctgtgccttatttatact
ctcaactttgccatggatcactgtgcaccccacctgtacaccttcgtactggccacggag
cacaccaggacccagtgcattaagatctcgttagaggagcacggggcggccattttgcaa
aacgcctgctgtttcgttatcgggatgttgcccttggtgtttgtgccttccaatctgacc
tacacgctgttcaagtgctccctcctcaccgcaggctgcacagtgctgcactgtttcgtc
atcctgcctgtgtttctaacgttttttcccccatcaaaaaaaaggcacaagaagaaaaaa
cgggcaaaacggaaagagcgggagagggagcgggagatgatggagagggagagagtgagg
gagagggaggagatagagtgcattgaagtcagggagaaccctgatcatgtgactaacgtc
tga
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