KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112252020
Entry
112252020         CDS       T05605                                 
Name
(RefSeq) lysine-specific demethylase 4B-like isoform X1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:otw03036]
    112252020
Enzymes [BR:otw01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     112252020
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     112252020
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    112252020
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H JmjN PHD_2 PHD DUF4537 Tudor_5 CDC45
Other DBs
NCBI-GeneID: 112252020
NCBI-ProteinID: XP_042178885
LinkDB
Position
LG06:complement(10941484..11026578)
AA seq 1253 aa
MGDMSVLPATMSLEAPDMGHDPAPDMGHDPAPDMGHDPAPDMSPELAADSAPVPELAPEL
TADTAPELAADSAPVPVMNPGCKIMTFRPTMEEFKDFAKYIAYMETQGAHRAGLAKVIPP
KGWKPRKSYDVIEEMTIPAPIMQVVTGQSGLFTQYNIQKKSMTVGEYRQLANSRKYCTPR
HKDFDDLERKYWKNLTFVSPIYGADVSGSIYDSEISEWNIGHLNTLLDMVEQECGIVIEG
VNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAQGFFPGS
SQGCDAFLRHKMTLISPSILKKYSIPFDRITQEEGEFMVTFPYGYHAGFNHGFNCAESTN
FATLRWIDYGKMATQCTCRKDMVKISMDVFVRCLQPERYVQWKQGKDGMVLDHQRPTTLT
SPELEHWRANRVTYRQKLLQRALQKKEQLRRLKLEEVKVLAEEGIEMDAAEYQRQVEERE
AQRRQEREERMAREAFQTLEAMEREDQEREERERQDRERQEAVAAKATRVHDPQADPQHL
TANGEKKKKKKKKKKKQQQPTLPLAPINSFQAAFEKFATFNMPQTPKEPQGSNDTEIPAE
GRLDVKGMQQQSSYYSKQLKIKVEVKKSRRHPLSKPPMRSPLSIVKQEMSSDEELFSPLP
LDGHVKKAGHLWQNRTPNILAEKSFNAAVATLEPYCAVCTLFCPYTQPQKDSLYLSDSPS
ALNHTPGCGSRTHPLVPEMCFSAGPDNTEPLPSNSHTGEDCTSPLISCSFCSLQVHSSCY
GVSLDTVHNQSWMCSRCTALAWTADCCLCNLRGGALKMTTDNRWVHVICAIAVAEARFVN
AIAREPVDISAIPDSRKSLKCVYCHKNTKQMCGACIQCSHDNCSTSFHVTCAHIAGVLMK
PADWPYVVSVTCHKHKKTNHKARVGPRGEFSLGQKVIGRNIDGWFYPCTIIGMTSQTFYE
VNYDDGSYCDNIFPENVVSHDCLRNGPPETGELMLVHNMEGQALNASYIKDHVHKYYQVE
FQDESQLLLKQTEIHSLEQDLPKRVCTRLAIPTQEALLTGDEPQAAKRPRLPAPHPTPQA
PIDPGCQPLATGPVPHSITPHTPSHAPGPSNTDISALTLTQALAIPISEPTLTPMPTLTD
PLPAPSALAAPLLPLSPAVPFQDQGEVYTARSVPFQDQGEAYTARSVPFQDQGEAYTARS
VPFQDQGEAYTARSVPFQDQGEGYTPSSSYVSYMETLLNTHFPPQEDGPGPLL
NT seq 3762 nt   +upstreamnt  +downstreamnt
atgggcgacatgtctgttctacctgccaccatgtcgctggaagcaccagacatgggccac
gatcctgcaccagacatgggccacgatcctgcaccagacatgggccacgatcctgcacca
gacatgtccccagaactagctgcagattccgctccagtcccagaattagcccctgagcta
acagcagatacagccccagaactagctgcagattcagctccggtcccagtaatgaatcca
ggttgtaagatcatgacattccggcccaccatggaggaattcaaggactttgccaaatac
attgcctacatggagactcaaggagcacaccgcgcaggcctggcgaaggtgattcccccc
aagggctggaagccacggaagtcatatgacgtcattgaggagatgacgatccctgctccc
atcatgcaggtggtgacgggccagtcaggcctctttacccagtacaacatccagaagaag
tccatgactgtgggggagtaccgccaactggccaacagcagaaagtactgcactccccga
cacaaggactttgacgacctggagaggaagtactggaagaacctcacctttgtatctcca
atctacggggctgacgtcagcggctccatctatgactccgagatcagtgagtggaacatt
ggccacctgaacacgctgctggacatggtggagcaggagtgtggcattgtgatcgagggg
gtgaacactccctacctgtactttggcatgtggaagaccaccttcgcctggcacacagag
gacatggatctctacagtatcaactacctccactttggagagcccaagtcctggtatgcc
atcccacctgagcacgggaaaaggctggagaggctggctcaaggtttcttcccaggcagt
tcccagggctgtgacgcctttctccgccacaagatgactctcatctccccgtccatactg
aagaagtacagcatccccttcgacaggatcactcaggaagaaggcgagtttatggtcacc
tttccttatggctatcacgccggattcaaccacggcttcaactgcgccgagtccaccaac
tttgccaccctgcgttggattgactacggcaagatggcaacacagtgtacatgtcgtaag
gacatggtgaagatctccatggacgtgtttgtccgctgcctgcagccggagcgctacgtc
cagtggaaacagggcaaggacggcatggtgctggaccaccagcgacccaccaccctgacc
agccctgagctggagcactggagggccaaccgggtcacctaccgccagaaactgcttcag
agagctttacagaagaaggagcagctgcggcggctgaaactggaggaggtcaaggttctg
gcggaggaaggcatcgagatggatgccgccgagtaccagcgtcaggtggaggagcgagag
gcccagcggcgccaggagagggaggagaggatggcccgggaggcgtttcagaccctggag
gccatggagagagaggaccaggagagggaagaacgggagaggcaggaccgagagaggcag
gaagccgttgccgccaaggccacaagagtacacgacccccaggcagacccacagcacttg
acggcgaatggagagaagaaaaagaagaagaagaagaagaagaagaagcaacaacaacct
accctgccgctggcccctataaattccttccaagcagcgtttgagaagtttgccacattc
aacatgccccagacaccaaaggagccccaaggcagcaatgacacggaaataccagcagag
ggcaggcttgatgtgaaaggcatgcagcagcagtcatcgtactactctaagcagttgaag
attaaggtggaggtgaagaagagtcgccggcaccccctcagcaagccgcctatgcgctct
ccgctatccatcgtcaagcaggaaatgtccagcgatgaagagctgttctcccctttgcca
ctggatggccatgtgaagaaggcgggccacttgtggcagaaccgcactcctaacatcctg
gctgagaagagtttcaacgcggccgtggccaccctggaaccctactgtgccgtatgcact
ctgttctgcccatacacacagccccagaaggactctctgtacctgtctgacagccccagc
gccctcaaccacactcccggctgcggcagccgcacccacccgctggtcccagagatgtgc
ttcagcgccgggccggacaacacggagccgctgccctccaactcccacacgggagaagac
tgcaccagcccgctgatctcctgctccttctgcagcctgcaggtccactccagttgttat
ggtgttagtctggacacggtacacaatcagtcctggatgtgttcgcgatgtacagcgctc
gcttggacagcggactgctgtctgtgtaacttacggggaggggctctgaagatgaccaca
gacaaccggtgggtccatgtgatttgtgccatcgccgtggcggaggctcgcttcgtcaac
gccatcgcaagggagccggtggacatcagcgccatccccgatagcaggaagagtctgaag
tgtgtgtactgccacaagaacaccaagcagatgtgcggggcgtgtatccagtgttcccac
gacaactgctccacctccttccacgtcacctgcgcccacatcgccggtgtgctcatgaag
ccagccgattggccctacgtggtgtctgtcacctgccacaagcataagaagaccaatcac
aaggcaagggtggggccaaggggggagttttctcttggtcagaaggtaattggtcggaac
atcgatggctggttctacccctgcaccatcattggcatgacctcacaaaccttctacgag
gtcaactacgatgacggctcctactgtgacaacatcttccccgagaacgttgtgagtcac
gactgtcttcgtaacggtcccccagagaccggcgagctgatgttggtccacaacatggag
ggccaggcactcaacgcctcctacatcaaggatcacgtgcacaagtactaccaggtggag
ttccaagatgagtcccagctgttactgaagcaaacagagatccattcgctggagcaggac
ctgcccaagagggtctgcactcgcctggcaataccaacccaggaagcccttctgacagga
gacgaaccacaggcagccaagaggcctcgcctccccgcccctcaccccacacctcaagcc
cccatagaccccggatgccaacccctagctacaggccctgtacctcacagtattacacct
cacacacccagccatgctcctggtccctccaacactgatattagcgcccttaccctcacc
caggctctggcaatacccatctccgagcccaccctcaccccaatgccaactctcactgat
cctctcccagccccgtcggccctagccgcccctctgctgcccctctccccagccgttccc
ttccaggaccagggtgaagtttacacagccaggtccgtgcccttccaggaccagggtgaa
gcttacacagccaggtccgtgcccttccaggaccagggtgaagcttacacagccaggtcc
gtgcccttccaggaccagggtgaagcttacacagccaggtccgtgcccttccaggaccag
ggtgaaggatacacgcccagctccagctacgtgtcctacatggagacgctgctcaataca
cacttcccccctcaggaagatggccccgggcccctgttataa

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