KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112252081
Entry
112252081         CDS       T05605                                 
Name
(RefSeq) roquin-1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:otw03000]
    112252081
   04121 Ubiquitin system [BR:otw04121]
    112252081
Transcription factors [BR:otw03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    112252081
Ubiquitin system [BR:otw04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    112252081
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-C3HC4_4 zf-RING_2 zf-C3HC4 zf-CCCH zf-C3HC4_2 zf-CCCH_UNK zf-CCCH_4 Prok-RING_4 zf_CCCH_4 zf-RING_6 Takusan FYVE
Other DBs
NCBI-GeneID: 112252081
NCBI-ProteinID: XP_042179621
LinkDB
Position
LG06:14792092..14822384
AA seq 1046 aa
MPVQAPQWTEFLLCPICTQLFEESLRKPISLGCGHTVCKMCLNKLHRKACPFDQTAIATD
IELLPVNTALLQLVGGQVPKRQPTTLVTGAEDIAHYEKASECVEELAQYLKPLSNSRGVG
LSTSSAQSSLSRPMQRKLVTLVHCQLVEEEGRVRATRAARSLGERTVTELILQHQNPQQL
SSNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASK
TSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEDFWTYEALRREHDSQIVQIAMEGGLRIA
PDQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLEL
LANIDPSPDSPPPTWELLDTGLVAVKTVVHGLVDFIQNHSKKGSDPQQPPQHSKYKTYMC
RDMKQKGGCPRGTSCTFAHSQDELEKYRKMNKRLAARRPLSLSLTQLNEVGLLPEEVGML
EGLAHKGLTNGMVASVTGSALPQLISRGADPSYEPMMRKSQGSLSAPSSPPDLLDPVPNR
AMAHPRMAVDHLAMHKQMPRRPSMYPPQQGELFYPPEPRAPPSALQYEASQNAPGNPPYP
YQPSQYPPQARYVRNPPPTNDPALPPTPAPTPRSASVPLPLSSRVPTSPMPTPKGLRLLH
IMTAVDTPPTPLHHHSPIPTGRTPPCLRTRPPEKDTFLRVTTPLAPTPESYSRPQPTPSL
DYLHRRRQEIMAQLEDGKQVTPPPFAPSPTLPHHYESNYTQEQQQYLENSQAFSKYREPD
YASQYSPWSCDTIGSYIGSKEGKSRDSMERMNAEGKGVEGRRRAAEARDDDPIIPFGSLP
TVSRFGVISRTPKTGYLTAGPGQAMTLSQGTNGPKHGAATGWGAAGYSQPPQAHLSERPV
KEREQLTMELQQVNQQINKQTAQADHPSPEEWSSGNISSQQLSLELHHVEREIGKRTRQI
ALEHLVSHDGSGAYKLKPTENGQRAEHSLVLSEGCNGPSGVLQDGSVASCGLSCLTSKTS
SLSLSADLSIAGGTDRKTNGVVPLCS
NT seq 3141 nt   +upstreamnt  +downstreamnt
atgcctgtgcaagcgccgcaatggacggaattcctgctgtgtcccatctgcacacagctg
ttcgaggagagcctccgcaagcccatcagcctgggctgcggccacaccgtctgcaagatg
tgcctgaacaagctgcatcgcaaggcctgccccttcgaccagacggctatcgccaccgac
attgagctgctgccagtcaacacagccctgctgcagctggtgggaggacaggtgcccaaa
cggcagccgaccaccttggtgacaggggcagaggacatagcccactatgagaaagccagt
gagtgtgtggaggagctggctcagtacctgaaacccctgagcaacagcagaggtgtgggg
ctgagcaccagcagcgcccagagttctctgagtcggcccatgcagaggaagctggtgacc
ctggtgcactgtcagctggtggaggaggagggccgggtgagggccacgcgggcggccagg
tctctgggggagcgcaccgtcactgagctcattctgcagcaccagaatccccagcagctc
tcctccaacctgtgggctgcagtcagggcaaggggctgccagtttctcggcccagcgatg
caggaggaggctctgaagctggtgcttttggctctggaggacggctccgctctatccagg
aaggtcctggtgctgtttgtggtccagaggttagagccacgcttcccccaggcctccaag
accagcataggccacgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaag
cgtgacgaggactcgtccctgatgcagttgaaggaggacttctggacgtacgaggcgctg
cggcgcgaacacgactcccagatcgtccagatcgcaatggaggggggcctccgcatcgcc
cctgaccagtggtcttccctgctctacggggaccagtcgcacaagtcccacatgcagtcc
atcattgacaagttgcagacgccagcgtcgtttgctcagagtgttcaggagctgaccatc
gccctgcagaggacaggtgacccggccaacctgaaccgcctgcgaccacacctggagctg
ctagccaacatcgacccaagtccagactcccctccccccacgtgggagctgctggacacg
ggcttggtggcagtgaagactgtggtacacggcctggtggacttcatccagaaccacagc
aagaaggggagcgacccacaacagccaccccagcacagtaaatacaagacgtacatgtgt
cgggacatgaagcagaaggggggctgtcctcgaggaaccagctgcaccttcgcccactct
caggacgagctagaaaagtaccgcaagatgaacaagcggctcgctgcccgccggcccctc
agcttatccctgacgcagctgaacgaggttggcctattgcccgaggaggtggggatgctg
gaggggctggcacacaagggcttgacgaatggcatggtggcgtcggtcacaggctccgcc
ctgccccagctcatctcccgcggtgccgacccctcctacgagcccatgatgcggaagtcc
cagggaagcctaagtgcccccagctctcctccagacttactggacccggtgcccaatcgg
gccatggcccatcccaggatggcagtggaccacctggccatgcacaagcagatgcccagg
aggccctccatgtacccccctcagcagggagaactcttctacccccctgagcccagggca
cctccatcagccctgcagtatgaggcctcccagaacgccccaggtaaccccccctacccc
taccagccctctcagtacccaccccaggctcgctacgtccgaaacccccctcccaccaac
gacccggccttgccccctaccccggcacctacccccaggagcgccagtgtccccctcccc
ctcagctctcgagttcccacttctccaatgccaacccccaagggtttgcgcctcctccac
attatgacggccgtcgacaccccgcctacccccctccaccaccacagtcctatccccacc
gggaggacccctccatgcctgcggacgaggcctccagagaaagataccttcctgagggtt
accacccctctggcccccaccccagagtcttacagccggccccagcccactcccagtctg
gactacttgcaccgccgacgccaggagatcatggcccagctggaagacgggaagcaggtc
actcctccacccttcgccccctcacctactctgccacaccactacgagtccaactacaca
caggagcaacagcagtacttggaaaactcacaagcgttttcaaagtaccgcgagccagac
tacgcgagccagtactctccttggtcatgtgacactatcggctcctacattggcagcaag
gaggggaagtccagagacagtatggagaggatgaatgctgaggggaaaggtgtggaaggc
aggcgcagggctgctgaggccagagatgacgaccctatcatccccttcggctctctgccc
accgtgtcacgcttcggggtgatctcccgcacccccaagacgggctacttgactgccggg
ccggggcaggccatgaccctctcacaggggaccaatggccccaaacacggcgctgcaaca
gggtggggtgctgccgggtacagccagccccctcaggcccacctcagtgaacggccagtc
aaggagagggagcagctgacgatggagctccagcaggtcaatcagcagatcaacaagcag
actgcccaggcggaccatcccagcccggaggagtggtcgtcagggaacatctccagccaa
cagctgagcctggagctccaccatgtggagagggagatcggcaagaggacccgccagata
gccctggagcaccttgtgagtcatgatgggagtggggcgtataagctgaagcccactgag
aacgggcagagagcggagcactcgttggtcctcagtgagggctgtaacggtcccagtggt
gtgctgcaggacggcagtgtggccagctgtggtttgtcctgccttaccagcaagacctcg
tccctcagcctgtctgcagacctctccatcgctgggggcactgaccgaaagaccaacggc
gtggtccccctgtgctcctag

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