KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112252124
Entry
112252124         CDS       T05605                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018  RNA degradation
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112252124
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112252124
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:otw03019]
    112252124
   03041 Spliceosome [BR:otw03041]
    112252124
Messenger RNA biogenesis [BR:otw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     112252124
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     112252124
Spliceosome [BR:otw03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    112252124
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 112252124
NCBI-ProteinID: XP_024278858
LinkDB
Position
LG06:16448506..16452404
AA seq 149 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMP
GVGMPGVGRGQQQEKKPAGGKPQGVKNQH
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctacctctatctttgctgaagactgcacagaaccaccctatgctggtggagttgaag
aatggagagacgtataacggacacttggtcagttgtgacaactggatgaatataaattta
cgagaagtcatctgcacctcaagggatggagataaattttggaggatgcctgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgagatcattgacatggtgaag
gaagaggtggtgtccaagggccgtgggcgaggaggcatgcagcagaacaaacagcagggc
aagggtcgagggggaggagcaggcagaggtgtgtttggaggccgtggtcggggcatgcca
ggagtgggaatgccaggagtaggcagaggccagcagcaggagaagaagcctgctggtggt
aaacctcagggagtcaagaaccagcactga

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