Oncorhynchus tshawytscha (Chinook salmon): 112252228
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Entry
112252228 CDS
T05605
Name
(RefSeq) protein strawberry notch homolog 2 isoform X1
KO
K26273
protein strawberry notch
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112252228
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112252228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Motif
Other DBs
NCBI-GeneID:
112252228
NCBI-ProteinID:
XP_024279047
LinkDB
All DBs
Position
LG06:complement(19942736..20041173)
Genome browser
AA seq
1668 aa
AA seq
DB search
MPSLPSPSPAMDGENYLHPEGPQLDSSIFEVASSNMESYLYPSGSWASFSQQSGGYNAHC
PMQSGNQQYHLNAPMPDLDMFSHSGFHDDFLNLPRNGDFPQSLSCIDDLSNSLFSSPADS
LSDYTDAQAFIPTDNLAHVPTIWDINTPAQSQLELNANRFQDLNSLEDIAAIISTPPLGG
YQQTQRNQTPAEEEAEEEEEETEELGHVDTYADYKPSKSTIGISHPDIVVETNTLSSVPP
PDITYTLSIPDSTINCGLLSALQLEAIIYACQQHEVILQNNQRAGFLIGDGAGVGKGRTV
AGIILENYLNGRKKALWFSVSNDLKYDAERDLKDIDAPTIPVHALNKIKYGDTATSEGVL
FATYSALIGESQAGGQHRTRLKQILDWCKPGFDGVIVFDECHKAKNATSTKMGKAVLDLQ
HNLPLARVVYASATGASEPKNMIYMSRLGIWGEGTPFKTFDDFLHAIEKRGVGAMEIVAM
DMKVSGMYIARQLSFSGVSFRIEEIGLDDDFKLVYNKAAKLWAEALAVFMRAADALCLVS
RKSLWGQFWSSHQRFFKYLCIAAKVRCLVELAKKELKAGKCIVIGLQSTGEARTREVLDE
NDGHLDRFVSAAEGVFKALVQKHFPSEKQRREKARGNKRKRKPRGRQPKFPKHTMVHLGG
VINISDDSSTDTDGMDTDSNSSPDSLMDNNDDVIFVQHTSCHTASIEKMKQSLLNKIADL
GKELPLNTLDELIDQFGGPEMVSEMTGRKGRVVRRPDGSVRYESRAEQSHTIDHINLKEK
DRFMCGEKMVAIISEAASSGISLQADKRVKNQRRRVHITLELPWSADRAIQQFGRTHRSN
QVTAPEYIFLISELAGERRFASIVAKRLESLGALTHGDRRATESRDLSKYNFENKYGTKA
LDKITKAILGHIESKVSPPKGYPGGDALFFRDMKHGMMDVGIFCKEPRFGLSTEKDCSIT
KFLNRILGLEVHKQNSLFQYFTDNFDYLIEKDKKEGKYDMGILDLAPGNDEIYEEKQETF
MTVGNPQDGQVVLYKISVDRGMPWEEAYEKVQNLNSPDEGFYLSHKLRGNHPCVLLAEQG
RGRNFIVYKPNIGKQAHPESLDNLQLRYRKVTPEQAKDSWESQFNFSFGKCSHANWNGKC
KKIEEGQECLQGMRLRQYHMLCGALLRVWKYVADVVSDITCSSILQIVRLKTKNSNKQVG
IKIPENCVARVRQELLKMDEEVKRRRKEKEQQRAQEQQRAQEQQRAQEQRLAQEQQLQNQ
HLLAKLYNQRQTLNHSFNNQNLSQGLKTQHLSLAQANPLQVKPLLQPKPSQLKPQLGPVN
QLPSMASPTSHFSNFPHHFPSLHLLQPDPSSSMPPRTGEEVLDLTVSPSPSPDSKERGLV
LDCLTRDGFGLDSLILLSELAAQNTAHKLQQPLQPLPPLTKPQQLLSPQQIQLQSPQQIQ
PQLQSPQQIHPQLQSPQQIQTQLQSPQQIQLQSPQQIQPQLQSPQQIQLQSPQQIQPQLQ
SPQQIQPQLQLPQQIQPQLQSPQQIQPQLQSPQQIQPQLQSPQQIQPQQRLDSPTLINSD
HQDYYDILKLLEDPDHLPYSLSSQTTTNPSTSSNTVAQVSSGLLSTPSSSLFSPSALAPS
EQQPLPLANGHCSTDALINVREVLDNMLRTSADRQTVIHYRLPEWDSV
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcctcccatcaccctcaccggccatggacggggagaactacctgcacccagag
gggccacagctggacagcagcattttcgaagttgcctcttccaatatggagagttatctg
tatccctctggttcctgggcatcattttcacagcagtctggaggctacaacgcacactgc
cctatgcaatctggaaaccagcaataccacttgaatgctcccatgcccgatttggacatg
ttcagccattcagggttccatgacgatttcctcaacctccccaggaacggagacttccct
cagagcctgtcctgcatcgatgacctctccaactctctgttctcctctccggccgactcg
ctgtcagactacaccgatgcccaggccttcatccccacagataacctggcccacgtgccc
acgatatgggacataaacacaccagcacagagccagctggagctgaatgccaacaggttt
caggatttgaacagtttggaggatatcgctgccattatcagcaccccacctttgggagga
taccagcagactcagagaaaccagactccggcagaagaggaggcagaggaggaggaggaa
gagacagaggagctgggacatgtagacacctacgctgactacaaaccatccaaatccacc
atagggatctcccacccagacatagtggtggagaccaacacgctgtccagtgtccctcca
cctgacatcacctacactctgtccattcctgactccaccatcaactgtggcctgctctct
gccctgcagctggaggccatcatatacgcatgccagcaacacgaggtaattctgcagaac
aaccagagagcaggcttcctgataggagacggggccggagtagggaaaggccgcacagtg
gccggcatcatcctggagaattacctaaacgggaggaagaaagcgctatggtttagtgta
tccaatgacctgaaatacgacgcagagagagatctgaaagacatagatgctcccaccatt
cctgtgcatgccttaaacaagataaagtatggagacacagctacctcagaaggagtcctg
tttgcgacatactctgcactgatcggggagagccaagcaggtgggcagcaccgcaccaga
ctcaagcagatcctggactggtgcaagcccggctttgatggagttattgtgtttgacgaa
tgccacaaggccaagaatgctacgtccaccaagatgggcaaggccgtgctggacctgcag
cacaacctgccgctggccagggtggtttacgccagtgccacaggtgcctctgagccaaag
aacatgatctatatgagccgcctggggatctggggcgagggcacgcccttcaagaccttt
gacgacttcctgcacgccatcgagaagaggggtgtaggcgcgatggagattgttgccatg
gacatgaaggtgagtgggatgtacatcgcccggcaactgagcttctcaggggtgtccttc
cgcattgaggagatcggtctggacgacgacttcaaactggtctacaacaaagctgccaaa
ctgtgggcggaggcgctggccgtgttcatgcgtgcagcggacgcgctgtgtctggtcagc
aggaagtccctgtggggtcagttctggtcttcccaccaacgcttcttcaaatacctctgc
atcgccgccaaggttcgctgcctggtggagctggccaagaaagaactgaaagctggcaag
tgcatcgtgattggtctacagtccacaggagaggcccgaaccagagaggtcctggatgag
aacgatgggcacctggacagattcgtatctgcagcagagggtgtgttcaaagctctggta
cagaaacactttccctccgagaagcagaggagagagaaggcacgtggaaacaagagaaaa
cgtaagcccaggggccggcagcccaaattcccaaagcacaccatggttcatctggggggt
gtgatcaacatcagtgacgacagcagcacagacacggacggcatggacaccgactccaac
tcctcgccagactccctgatggacaataacgatgacgtcatcttcgtccagcacaccagc
tgtcacacagccagtatagagaagatgaagcagagcctcctgaacaagatcgctgacctg
ggaaaggaactacctctgaacactctggacgagctcattgaccagtttggaggaccagag
atggtatcggagatgacgggtcgtaagggtcgcgtggtgcggcgtcctgacggaagcgtg
cgctacgagtcgcgtgcagagcagagccataccatagaccacatcaacctcaaggagaag
gaccgcttcatgtgtggagagaagatggtggccatcatctcagaggcagccagctcgggc
atctccttgcaggcagacaagcgggtgaagaaccagcgtcggagggtccacataacccta
gagctgccctggagtgcagacagagccatccagcagtttggtcgtacccatcgctctaac
caggtgacggctccagagtacatcttcctcatctctgagctggccggggaaagacgcttc
gcctccattgtggccaagagactggagagcctgggtgcattgacccacggtgacaggaga
gccacagagtccagagacctgagcaaatacaactttgaaaacaagtacggtaccaaggct
ctggataagatcacgaaagccatcctgggccacatcgagagcaaggtgtcccctcccaaa
ggttaccccgggggtgatgctctgttcttcagagacatgaagcatggcatgatggacgtg
ggtatcttctgcaaggagccacggtttggtctcagcactgagaaagactgcagcatcacc
aagttcctcaacaggatcctgggcctggaggtccacaagcagaactctctgttccagtac
ttcaccgacaactttgactacctgatcgagaaggacaaaaaggagggcaaatacgacatg
ggaatcctagatctggccccaggtaatgatgaaatctacgaggagaagcaagagaccttc
atgacagtgggaaacccccaggacggacaggtcgtgctctacaagatcagcgtggacaga
ggtatgccctgggaggaggcctatgagaaggtccagaacctcaacagtcctgacgagggc
ttctacctctcacacaagttgcgggggaaccacccgtgtgtgctgctggcggagcagggt
cgagggaggaacttcatcgtctacaagcccaacatcgggaagcaggcccacccagagagc
ctggacaacctgcagctacgctaccgcaaggtgactccagaacaagccaaggacagctgg
gagagccagttcaacttctcctttgggaaatgtagccatgctaactggaacgggaagtgt
aagaagatcgaggagggtcaggagtgtctgcagggaatgcgtctgcgccagtaccacatg
ctgtgtggtgcgctactgcgcgtctggaagtatgtggctgacgtggtctctgacatcacc
tgctccagcatccttcagatcgtacgcctcaaaaccaaaaatagtaacaagcaagtcggt
atcaagatcccagagaactgtgtggcccgagtgcggcaggaacttctcaaaatggacgag
gaggtgaagagaaggcgcaaggagaaggagcagcagcgcgcccaggagcagcagcgcgcc
caggagcagcagcgcgcccaggagcagcggctagcccaggagcagcagcttcagaaccaa
cacctgctggccaagctttacaaccagagacagaccctgaaccacagcttcaacaaccag
aacttgtcgcagggcctcaagacccagcacctgagcctggcccaggccaatcctctacag
gtcaagcctctactccagcccaaaccttcacagctcaaaccccagctcggtccagtcaac
cagctccccagcatggccagccccacctcccacttctccaatttcccccaccacttcccc
tccctgcacctcctgcagcccgacccctcctcctccatgccccctcggaccggggaggag
gtcttagacctgacggtgagcccctctccctccccagacagcaaagagagaggcctggtc
ctcgactgcctgaccagagacggctttggcctggactctctgatattgctgagcgagctc
gccgcccagaacactgcacacaaactgcagcaacctctacagccactgccaccactgaca
aagccacagcagctactgtcgccacagcagatacagctacagtcgccacagcagatacaa
ccacagctacagtcgccacagcagatacatccacagctacagtcgccacagcagatacaa
acacagctacagtcgccacagcagatacagctacagtcgccacagcagatacaaccacag
ctacagtcgccacagcagatacagctacagtcgccacagcagatacaaccacagctacag
tcaccacagcagatacaaccacagctacagttgccacagcagatacaaccacagctgcag
tcgccacagcagatacaaccacagctgcagtcgccacagcagatacaaccacagctgcag
tcgccacagcagatacaaccacagcaacggttggacagtccgactctaatcaacagcgac
caccaggactactatgacattctcaaactgctggaagatccagaccatctgccttactct
ctgtctagccagacaactactaacccctccacttcctccaacacagtggctcaagtctcg
tccggcctcctctctaccccctcctcctctctcttctctccttcggcactggccccctca
gaacagcaaccgctccctctggccaacggccactgcagcacggacgccctcattaatgtg
cgcgaagtgctggacaacatgctgcggaccagcgcagaccggcagacggttatccattac
cggctgcctgaatgggactctgtgtaa
DBGET
integrated database retrieval system
