Oncorhynchus tshawytscha (Chinook salmon): 112252251
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Entry
112252251 CDS
T05605
Name
(RefSeq) thyroid hormone receptor alpha-like
KO
K05547
thyroid hormone receptor alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04080
Neuroactive ligand-receptor interaction
otw04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112252251
04081 Hormone signaling
112252251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112252251
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112252251
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112252251
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
112252251
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
112252251
NCBI-ProteinID:
XP_024279096
UniProt:
A0A8C8DDK8
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Position
LG01:47660271..47755730
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AA seq
416 aa
AA seq
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MEPISNVEDPNSSEGDVKRWPNGPKRKRKNSTCSLKSMSALSLSVPGYIPSYLEKDEPCV
VCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFRK
CIAVGMAMDLVLDDSKRVAKRRLIEENREKRKKDEIVKTLHTRPEPDSSEWELIRHVTEA
HHHTNAQGSHWKQKRKFLPEDIGQSPGAPTPDGDKVDLEAFSEFTKIITPAITRVVDFAK
KLTMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGV
VSDAIFDLGKSLAQFNLDDSEVALLQAVLLMSSDRSGLTSVDKIEKCQETYLLAFEHYIN
HRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFLEVFEDQEV
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggagcccatttccaacgtcgaggaccccaactcatcagagggagatgtgaaacgctgg
cccaatggaccaaaaaggaagagaaagaacagcacatgttcattgaagagcatgtctgca
ctgagcctctctgtcccaggatacatccccagctacttggagaaggatgagccatgtgtg
gtatgtggagacaaggccaccggctaccattaccgctgcatcacatgcgagggctgcaag
ggtttcttcaggcgaactatccaaaagaaccttcacccggcttactcctgtaagtacgat
ggctgctgcatcatcgacaagatcacaaggaaccagtgccaactgtgtcgcttcaggaag
tgcatcgcagttggcatggctatggacctggtgctggacgactctaagcgggtagccaag
cgtcgtctgattgaggagaaccgggagaagaggaagaaggacgagatcgtgaagactcta
catacacgtccggagcccgacagctcggagtgggagctgatccgccatgtgacagaggcc
caccaccacaccaacgcgcagggctcccactggaaacagaaacgcaagttcctgcctgag
gacataggtcagtcccccggggctcccaccccagatggagacaaggtagacctggaggcc
ttcagcgagttcaccaagatcatcacccccgccatcacacgcgtcgtcgactttgccaaa
aaactaaccatgttctcagagctgccttgtgaggaccagatcatcctattgaaaggttgc
tgtatggagatcatgtcgcttcgtgccgccgtgcgctacgacccagagagtgagacgctt
accctgagcggcgagatggcggtgaagagggagcagctgaagaatggcgggctgggcgtg
gtgtcggacgccatctttgatttgggcaagagtctggcgcagtttaacctggacgactcg
gaggtggcccttctgcaggctgtgctcctcatgagctcagatcgctctggcctgacatcg
gtagataagatcgagaagtgccaggagacatacctgcttgccttcgaacactacatcaac
caccgcaagcacaacattccccacttctggcccaagctgctgatgaaggtgacggacctg
aggatgatcggggcatgccacgccagccgcttcctccacatgaaggtggagtgtcccaac
gaactcttccctccgctcttcctggaggtcttcgaggaccaggaagtatga
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