Oncorhynchus tshawytscha (Chinook salmon): 112252276
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Entry
112252276 CDS
T05605
Name
(RefSeq) serum response factor isoform X3
KO
K04378
serum response factor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112252276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112252276
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
112252276
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
112252276
NCBI-ProteinID:
XP_024279140
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Position
LG01:48143670..48206114
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AA seq
583 aa
AA seq
DB search
MLPSQAGSAPSGNGSASVSGNTGHGSVVIGSGIRPVLVRAVQTTTGVSDSTGAVGMLGGN
GPEVGPRGGARTVSGTGLTTLQTAGQGGIGILNTGVGVHGGSRYDPDKKCAPMGCSGSDA
DSDSGDDDDMMGSIRDNRRGVKRERLEMEATVTGQGTGVPPGAYGLVPGGVAGAKPGKKT
RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR
KLQPMITSETGKALIQTCLNSPDSPPRNDPSTDQRMSATGFEETDLTYQVSESESLGETK
DQLKPAFTVASLPGTTSTHTPTAPTTSTSMQVSSGPSFPITNYLAPVSASSNVNANGTIL
KTTGASGGQVMQLPSGFTFMSAGTSLPPGTPTIPLSQLHQHSLAIQGQTLTSSQLTQQGQ
QAVFRFPTAVSLGGGMTQQLQAIQVHPTTHANDSSSEISQTSSVSTATIVTSSVPTSMAG
HMMYTSPHTVMYASTPTLADGGLAVLNTFSQGPSAMQVSHGQCQDTGAVPQVFLTAPSGT
MQIPVSAVQLHPMVISQKSSYSSSNLTELQMVNLDTTQSAKND
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgttaccaagccaggctggatcagcaccatctggaaacggatcagcgtctgtcagtggt
aacacaggtcacggttctgttgttattgggagtggaattcgccccgtgttggtcagagca
gtgcagacgacaactggggtcagcgacagcaccggtgcggttgggatgttggggggcaac
ggtccagaagtgggtccaagaggtggggcaagaacagtgagcgggacgggactgacgact
ctacagaccgcaggccagggaggcatcggaattctgaatacgggagttggggttcacgga
gggagccggtacgacccagacaaaaagtgtgcgcccatggggtgcagtgggtcagacgct
gattcggactcgggggatgatgacgacatgatgggatcaatcagagacaacagaagaggt
gtaaagcgggagagactggagatggaggctacggtgacagggcaggggactggggtacca
ccgggggcttatggtttagtccccggaggtgttgctggcgcaaaaccggggaagaagaca
cgtgggcgtgtaaagataaaaatggaatttatcgacaacaagttgagacgatacacaact
tttagcaagaggaagacaggcataatgaagaaggcttatgagctctcaacgttgacagga
acccaggtcctgctactggtggccagcgagacgggccacgtctacacgttcgccacccgg
aagctccagcccatgatcaccagcgagacaggcaaggccctcatccagacgtgcctcaac
tctccggactccccgccccgcaacgacccctccactgaccagcgtatgagcgccacaggc
ttcgaggagacggaccttacctaccaggtgtctgagtcggagagccttggggagaccaag
gaccagctaaagcctgcgttcacggtggccagcctcccgggcaccaccagtacccacacg
cccacggcccccaccacctctaccagcatgcaggtaagcagcgggccctccttcccaatt
accaactacctggcgcccgtctcggccagcagcaacgtcaatgccaacggcaccattctc
aagaccaccggtgcctccggagggcaggtcatgcagctgcccagcggcttcaccttcatg
tcagcaggcacttcgctcccccccggcacgcccaccattcctcttagccagctgcaccag
cactccttggccatccaggggcagacgctcacctcatcgcaactgacacagcagggccag
caggccgtcttccgcttccccactgcagtctccctagggggagggatgacccagcagctg
caggccatccaggtgcaccccaccacacatgccaacgacagcagctctgagatatcccag
acctcctctgtctccactgcgaccatcgtcacatcgtcagtgcccacatctatggcgggt
cacatgatgtacaccagcccccatacagtgatgtatgcgtccacgcccacgctggccgat
ggtggcctggctgtgctcaataccttttcccagggcccctcggccatgcaggtgtcccat
ggacaatgccaggacacaggtgctgtccctcaggtattccttacggcaccctcgggcacc
atgcagatcccagtttcggcagtgcagctacacccaatggtgattagtcagaagtcgagc
tacagcagcagtaacctgacagagctgcagatggtcaacctggacaccacacagagcgct
aagaacgactga
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