KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112252289
Entry
112252289         CDS       T05605                                 
Symbol
vps4a
Name
(RefSeq) vacuolar protein sorting-associated protein 4A
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250  Viral life cycle - HIV-1
otw04144  Endocytosis
otw04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    112252289 (vps4a)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    112252289 (vps4a)
  09143 Cell growth and death
   04217 Necroptosis
    112252289 (vps4a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:otw04131]
    112252289 (vps4a)
   03400 DNA repair and recombination proteins [BR:otw03400]
    112252289 (vps4a)
Membrane trafficking [BR:otw04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    112252289 (vps4a)
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    112252289 (vps4a)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 TIP49 AAA_22 AAA_14 AAA_25 AAA_5 IstB_IS21 RuvB_N AAA_18 DUF815 AAA_17 AAA_33 AAA_2 RNA_helicase nSTAND3 AAA_24 PhoH ResIII AAA_28 Mg_chelatase AAA_7 Parvo_NS1 NACHT bpMoxR DUF5906 AAA_30 YhdB Viral_helicase1 TPR_1 TPR_2
Other DBs
NCBI-GeneID: 112252289
NCBI-ProteinID: XP_024279167
LinkDB
Position
LG06:24247692..24255025
AA seq 436 aa
MTTSTLQKAIDLVTKATEEDKNKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRGKC
MQYLDRAEKLKDFLKNKEKTGKKPVKEAQSNDKSDSDSEGENPERKKLQEQLMGAIVMEK
PNVRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA
TEANNSTFFSVSSSDLMSKWLGESEKLVKNLFDLARQHKPSIIFIDEVDSLCGSRNENES
EAARRIKTEFLVQMQGVGNNNDGILTLGATNIPWVLDAAIRRRFEKRIYIPLPEEPARSQ
MFRLHLGNTPHSLSDADLRQLAKKTEGYSGADISVIVRDALMQPVRKVQSATHFKKVRGP
SRANSQLMVDDLLTPCSPGDPAAIELTWMDVPSDKLLEPIVCMSDMLRSLSTTRPTVNSE
DLFKVRKFTEDFGQEG
NT seq 1311 nt   +upstreamnt  +downstreamnt
atgacaacgtcaacattacagaaagcgattgatcttgtgaccaaagccacagaggaggac
aagaacaagaactatgaggaagccttgcgcctttaccagcatgcagtggagtacttcctg
catgctatcaagtatgaggcacacagtgacaaggcaaaggagagcatacgtgggaagtgt
atgcagtacctagaccgggccgagaaactcaaagatttcttgaaaaacaaagaaaaaaca
gggaagaagcctgtcaaggaagcacagagtaatgataagagtgacagtgacagcgagggt
gaaaacccagagagaaagaaactgcaggagcaactgatgggtgccattgtgatggaaaag
cccaatgtccggtggaacgatgtagctgggctagagggagctaaggaggccctgaaggaa
gctgtaatcctgcccattaaattccctcacctcttcacaggcaaacgcactccatggaga
gggattcttctctttggaccccctgggacgggaaagtcttacctggccaaagcagtagcc
acagaagccaacaactccaccttcttttctgtgtcatcatcagacctcatgtccaagtgg
cttggagagagtgagaaactggtgaagaacctgtttgatcttgcccgccagcacaagccc
tccatcatctttattgacgaggtggactcgctctgtggctccaggaatgagaatgagagt
gaggcagcccggcggattaagaccgagttcctggtacagatgcaaggtgtgggcaacaac
aacgatggaatcctcacccttggggccactaacattccctgggttctggatgctgccatc
cgtagaaggtttgagaagcgtatctacatccctctcccagaggagcccgccaggtcacag
atgttccggctgcacctgggcaacacaccccacagcctgagtgacgcagaccttcgtcag
ctcgccaaaaagacagaaggctactccggggctgacatcagcgtcattgtacgagatgcc
ctcatgcagcctgtcaggaaagtgcagtcagccacacacttcaaaaaggtgcgagggcca
tcccgtgccaacagtcaattgatggtggatgaccttctgaccccgtgttcgcctggggac
ccagctgccatagaattaacctggatggatgtgcctagcgacaagctgctggaacccatc
gtctgcatgtctgatatgctgcggtcactgtcaaccacgcgtccgacagtcaacagtgaa
gacttgttcaaggtcaggaagttcactgaggactttggacaggagggctaa

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