Oncorhynchus tshawytscha (Chinook salmon): 112252338
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Entry
112252338 CDS
T05605
Name
(RefSeq) nuclear pore complex protein Nup93 isoform X1
KO
K14309
nuclear pore complex protein Nup93
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112252338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112252338
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112252338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
Motif
Other DBs
NCBI-GeneID:
112252338
NCBI-ProteinID:
XP_024279236
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Position
LG06:complement(27029024..27075887)
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AA seq
820 aa
AA seq
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MEAEGFGELLQQAEQLAAETEAVSELPHVERNLQEIQQAGERLRSRTLTRTSQDAADVKA
SILLGSRGLDIFHISQRLESLSAATTFEPLEPVKDTDIQGFLKNERDNALLSAIEESRRR
TFLLAEEYHRESMLVQWEQVKQRVLHTLLGAGEDALDFSQDVEPSFVSDAGTPGRSALDS
VEVAYGRQIYVFNEKIVNGHVQPNLGDLCASVVDSLDDKNVSDMWLMVKQMTDVLLVPAK
DTLKSRTSVDMQMAFVTQALQFLENSYKNYTMVTVFGNLLQAQLGGVPGTYQLVCSFLNI
KLPGPLPGMQDGEVEGHPVWALIYYCLRCGDLGAAMQVVNRVQHQLGDFKTWFQEYMNSP
DRRLAPATENKLRLHYRRVLRNSADPYKRAVYCLIGKCDIADNHGEVADKTEDYLWLKLN
QVCFDDDGSSAPQDRLTLAQLQKQLLEDYGESHFSAIQQPFLYFQVLFLTAQFEAAVAFL
FRVERLRSHAVHVALVLYELGLLLKSSGQSAQLLSQEAGDPPMVRRLNFIRLLMLYTRKF
ESTDPREALQYFYFLRNEKNSQGENMFMCCVSELVIESREFDMLLGRLEKDGSRKPGVID
KFAGDTRAIITKVALEAENKGLFEEAVKLYELTKNPDRVLELMNRLLSPVIAQVGSTQSN
KERLKNTAVAIAERYRTQGVAGEKSVDSTFYLLLDLMTFFDEYHVGHIDQAYDVMERLKL
VPLSQDSVEERVAAFRNFSDEVRHNLSEVLLATMNILFMQYKRLKGATAGAPGRPQRSME
DRDSQLRSQARALITFAGIIPYRMAGDTNARLVQMEVLMN
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggagggctttggagagctcctgcagcaggcggagcagcttgcagcggaaact
gaggctgtgtctgagcttccccatgttgagaggaaccttcaggagatccagcaggctgga
gagaggctacgttcccgcaccttaacccgaacgtcgcaagacgctgctgacgtaaaagcc
tctatcctcctgggttccagaggcctggacatattccacatctcccagcgtctggagagc
ttgagtgctgccaccacctttgaacctctggagccagtgaaagacactgacatccagggc
tttctgaagaatgagagggacaatgcgctgctctctgcaatcgaggagtcacgtcgcagg
acattcctcttggcagaggagtaccaccgtgagtccatgctggttcagtgggagcaggtg
aagcagagagtactgcacaccttgctgggagcaggggaagatgctctggacttcagccaa
gacgtagagcccagctttgtgagtgacgcagggactcctgggcggagtgctcttgacagc
gtggaggtagcctatggacgacagatctacgtcttcaatgagaagatagtgaacggacac
gtccagcccaacctgggagacctctgtgcctcagtggtagacagcctggatgacaagaac
gtgtcagatatgtggctgatggtgaagcagatgacagacgtgctgctggtcccagccaaa
gacacgctgaagagccgcacgtccgtggacatgcagatggctttcgtcacgcaggccctg
cagttcctggagaacagctacaagaactacaccatggtaacggtgtttgggaacctgctc
caggcccagctgggcggagtccctggcacctatcagctggtgtgcagcttcctcaacatc
aagctaccagggcctctgccaggcatgcaggatggtgaggtggagggtcacccagtctgg
gctctgatctactactgccttcgctgtggggacctgggggctgccatgcaggtggtgaac
cgggttcagcaccagctgggagacttcaagacctggttccaggaatatatgaacagccct
gacaggcgcttggcccctgccacagagaacaagctgcgtctccactaccgcagagtgctg
aggaacagcgctgacccctacaagagggccgtctactgcctcattgggaagtgtgacatt
gcagacaaccatggagaggtggccgacaaaaccgaggactacctgtggctcaagctcaac
caggtgtgcttcgatgacgacggcagcagtgctcctcaggacagactgacactggcccag
ctacagaaacagcttctagaggactatggagagtcccacttctcagccatccagcagccg
ttcctgtacttccaggtgctgttcctcacggcccagtttgaggctgctgtggctttcctg
ttccgggtggagcgtctacgcagtcatgctgttcacgtggctctggttctctacgaacta
gggctgctgctcaagtcatctggacagagcgcacaactgttgagtcaggaggctggagac
ccccctatggtccgacggctcaacttcatccgtctcctcatgctctacacacgcaagttt
gagtccacagacccccgggaagctctacagtacttctacttcctacggaatgaaaaaaac
agccaaggagaaaacatgtttatgtgctgtgttagcgagctggtgattgagagtcgagag
tttgacatgcttctgggaagactggaaaaagatggcagcaggaagcctggagtgattgat
aaatttgccggagacacgcgagccattatcacaaaagtggcgctggaggcagagaacaag
ggcctgtttgaggaagcagtcaaactgtatgagctgaccaagaatccagacagggtccta
gagctgatgaacaggctgctgagtcctgttattgcccaagtgggctccacccagtccaat
aaggagagactgaagaacaccgctgttgccatcgctgagcggtaccggacccagggtgtt
gctggagagaagtctgtggacagcaccttctacctgctgctggacctcatgaccttcttt
gatgagtaccatgttggtcacatagaccaagcctacgatgttatggagagactgaagctg
gtccctctgagtcaggacagtgtggaggagagggttgctgcattccgtaatttcagtgat
gaggtcaggcataatttgtcggaggttctcctggccaccatgaacatcctgttcatgcag
tacaaacgtctgaagggcgccacagcaggagcccctggtcgaccacagagatccatggag
gacagagactcgcaactgcgcagccaggctcgagcactgatcacgtttgctgggattatc
ccataccgcatggcaggcgacaccaatgcccggctggtgcagatggaggtcctaatgaac
tga
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