Oncorhynchus tshawytscha (Chinook salmon): 112252355
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Entry
112252355 CDS
T05605
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112252355 (ctcf)
03036 Chromosome and associated proteins [BR:
otw03036
]
112252355 (ctcf)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112252355 (ctcf)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112252355 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
zf-met
zf-C2HE
Zf-C2H2_ZNF451
zf-C2H2_6
Zf-C2H2_ZNF451_C
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
112252355
NCBI-ProteinID:
XP_024279266
LinkDB
All DBs
Position
LG06:complement(27642376..27649541)
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AA seq
802 aa
AA seq
DB search
MKYSFLVQVLPMDGGPTDVVVEAKDSITYEGEEVVADLLQQAAEGVMDQQPVGEGGLDPQ
ELVDGVNVEMMVMDSLDPALLQMKTEVMDAPVITAHEATVTTVDETQIITLQVVNLEEQQ
LGGLGELQLVQVPVSAVPVTQATVEELQGTFVDATAMPKDGNPMICHTLPLPEGFQVVKV
GANGEVETVEQDELQHQEEQQVQPEEEEEELHCETQPDDPQWTTDPDYQPPAKKTAKKAK
KSKLRYNTEGDKDNMDVSVYDFEEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKKTF
QCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQD
CDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSY
ASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI
ARKSDLGVHLRKQHSFIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYCCRQ
ERHMLMHRRTHTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPNFVPTAFVCTKCGKTFTR
RNTMARHAENCNGDPTEGENGTPPKRGRGGRKRKMRSRKDDDDDDDSEDNADPELDDIDE
EDEDAEEALLEEEEEEEMELEQAPPTKPIPAPVEPPVKRKRGRPPKNAPKPASPAKASKA
APKGKAAAAAAIIQVEDENTGVIENIIVKNEPEAEQAAIEVVVEQSEEAEAEAGVETVEL
PVAEAAPNGDLTPEMILSMMDR
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgaagtattcctttctggtgcaggtattaccgatggacggcggaccaaccgatgttgtg
gttgaggccaaggacagcatcacctatgagggggaggaggtggtggcagacctgctccag
caagcagcagagggggtaatggaccagcagcctgtgggagaggggggcctggatccccag
gagctggtggatggagtcaatgtggagatgatggtaatggattccctggaccctgccctg
ctgcagatgaagactgaggtgatggacgcccctgtgatcacagcccacgaggccacggtc
accacagtggatgagacccagatcatcactctgcaggttgtcaatttggaggagcagcag
cttggaggccttggggagctacagctggtccaggtgcctgtctctgctgtgcctgtaacg
caggccactgtagaggagctacagggcaccttcgtggacgccacggccatgcccaaagat
ggaaaccctatgatctgccacaccctgcccctgccagagggcttccaggtggtgaaggtg
ggtgcgaatggtgaggtggagacggtggagcaggatgagctccagcaccaggaggagcag
caggtccagcctgaggaggaggaggaggagctgcattgcgagacccagcctgatgaccca
cagtggaccacagacccagactaccaacccccggcgaagaagactgccaagaaagcaaag
aagagcaagctgcgctacaacactgagggggacaaagacaacatggatgtgtctgtctat
gactttgaggaggagcagcaggaggggatgctctctgaggtcaacgcagagaaggtggtg
ggcaacatgaagccccccaaacccacaaagatcaagaagaagggtgtgaagaaaacattc
cagtgtgagctgtgtagctacacctgtccccgccgctccaacctggaccgacacatgaag
agccacacggacgagagaccacacaagtgccatctgtgtggaagggccttcaggactgtt
accctgctgaggaaccacctcaacacacacacaggtaccagaccacacaagtgtcaagat
tgtgacatggcctttgtgaccagtggagagctggtccgacatcgtcgctacaagcacact
catgagaaacccttcaagtgctccatgtgtgactatgccagtgtagaggtgagcaagcta
aagcggcacatccgttcccacactggggagcgtccgttccagtgcagtctgtgcagctac
gccagcagagacacctacaagctgaagagacacatgaggacacactcaggagagaagccg
tatgaatgctacatctgccacgcccgtttcacccagagtggaaccatgaagatgcacatc
ctgcagaagcacacagagaacgtggccaagttccactgcccccactgtgacacagtcatc
gcccgcaagagtgacctgggcgtccatctgcgtaagcagcattcattcattgagcaggga
cggaaatgccgttactgtgatgctgtgttccacgagcgctatgctctcatccagcaccag
aagtcccacaagaatgagaaacgcttcaagtgtgaccagtgtgactactgctgcagacaa
gagcgtcacatgctgatgcacaggcgcacgcacacaggagagaagccgtacgcctgtagc
cagtgtgagaagaccttccgtcagaagcagctcctggacatgcacttccggcgctaccat
gaccccaactttgtgcctactgcctttgtgtgcaccaagtgtggcaagaccttcacccgc
aggaacaccatggccagacatgcagagaactgtaacggggatcctactgaaggagagaac
ggaaccccacccaagagaggacggggtgggaggaagaggaagatgcgctcaaggaaggac
gatgatgatgatgacgatagtgaggacaatgctgatcctgagctggatgacattgatgaa
gaggatgaggatgccgaagaggcactgctggaggaagaggaggaagaggagatggagttg
gagcaggctccacccaccaagcctatccccgcccctgtggagcctcccgtcaagaggaaa
cggggtagaccccccaagaatgcgcccaaacctgcctcacctgccaaagctagcaaggct
gcccctaagggcaaggctgctgcagcagcagccatcatccaggtggaggatgagaataca
ggtgtcatagagaacatcatagtgaagaatgagccagaggctgagcaggctgccatagag
gtggtggtggagcagtctgaggaggcggaggcagaggcaggggtggagacagtggagctg
cctgtagcagaggctgcccccaatggagatctcacccctgagatgatcctcagcatgatg
gaccggtga
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integrated database retrieval system
