Oncorhynchus tshawytscha (Chinook salmon): 112252362
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Entry
112252362 CDS
T05605
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112252362 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112252362 (edc4)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112252362 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
112252362 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EDC4L
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Pdc1_Ge1
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
112252362
NCBI-ProteinID:
XP_024279280
LinkDB
All DBs
Position
LG06:27881379..27908532
Genome browser
AA seq
1405 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNNLDASPCESQRKTSFNGELNGLLPGAGSRSTMD
ESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKVKIQP
VAKYDWEHKHYYGNLIAVSNSYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAVTDLA
FAHLDSTLLGCVDEAGNLVIWQLTCHSSKIQDQVVVHIRRPEDTPLNSNRRLIWCPFIED
NEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTERISEGA
LSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCLLFCDN
HKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDLS
AECLILSDVQRKVLYVMELLQDQEKGHASFTAVSEFLLTHPVLSFGVQDVSHSRLRHTEV
LPPDEESESMTAEGIQGPMESRAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLFLPHSN
DGFGFSDHLTDMSMEGLSSDKESGCGSQNDLRKIPALPAPADFMSPAGAAAMPKLMTPDA
FMTPSASVPASPGSSASSLKIVTAMTSNSDSGARGGEELTQNPKMSVESSSSSSLTLSVS
TSSPRASSLLISGLGDNMPVLPSPNPPLSLDPQAIEPMLIQHASPTLARSPDVISSASTA
MSQDIPEIASETLQRSLGVVSGAESRDPLPALHTDSMASAASALHHLSPRNRNNSDHGHL
TLELGAGAVEVEQRLSNTPSLLENALSQENAAAAAAASCSDNNTSHPWPAAPDITRETRN
SLRDNGLGDCSREEMKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNC
GARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASQSRQPEHHNHQHQMNPEVQEELLML
LRNQQRELADLRQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHEQRRMERILAEGQ
NRNQQLQEHLSQQLAQTLNNTLCNRLDKTLREEMKKSVPPTIIKSLEPVTAQMNNTIAAK
LTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSM
FQQINDSFKQGTHEYIQQLETHVKSRKQHEQEGQDPMIGQLQQMIDTFQNSTDQLATTVT
ASVRSEVQHQLNMTVGNLQESILTQVQRIVKGEVSMAMKEQQAAVTSSIMQAMRSAAGTP
VPTPLLDYQAQQANILQLLQQGQLNQAFQQALSASDLNLVLYVCETIDSQQVFGQHPCPL
IQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSTVLSQVRQKLFQFL
QQDPHSPLSKRARRLVMMLQGLVNH
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgacatatta
aagttggatagacccgggaacaacttagacgcatctccatgtgagagccaaagaaaaacc
tctttcaatggcgaattgaatggacttctgccgggagctggcagcaggtcaacgatggat
gaatccacaggccctaattcagagaacatgaatacccaagagtgccagataatctgcctc
tctggggatgatggctccacttgtattcccatcacatccaacaatgttgaaattgtggcc
agtcgagactcaagcattgacagcaaggcccgtggcagcaacaaggtaaaaatccagcct
gtcgccaagtacgactgggagcacaagcattactacggcaacctgattgcagtttctaac
tcatacctggcatatgcaatccgaggagcaaacaaccaggccatgatccgtgtgttgagc
ctgggctccgccgagcgcaccctgctgaagggcttcactggtgcagtcacagacctggcc
ttcgcccatctggactccaccctgctgggatgtgttgatgaagccggcaacctggtcatc
tggcagctcacctgccacagcagcaagatccaggatcaagtggttgtccacatccggagg
cctgaagacacacctctaaactccaataggaggttgatctggtgtcctttcatagaggac
aatgaagagaaccctgaggatgctagccagaccctggccctgctgcatgaagacagggct
gaggtgtgggatctggagatcctccgcagcaacaatagcacctggccagtagatgccact
gacctgaaggatggagttataaccataaaaggacatacagagcgtataagtgaaggtgcc
ctgtctccagatggcacagtcttggccacagccagtcatgatggttatgtaaagttctgg
caaatctacattgaaggacaggaccagccaagtcctctccccggcttctttcacagatgt
ctgcatgagtggcagccccacaatgggaaccccctctcctgcctgctgttctgtgacaac
cacaagaaacaggacccagatgttccattctggcgctttctgattactggagctgatcag
aaccaggagctgaagatgtggtgcacagtgtcatggacctgcctgcagaccatcaggttc
tctccagacccgttcaactcctcagtcctgcccagtctaaaggccagcctggacctctct
gcagaatgcctcatcctcagcgacgtgcagagaaaggtgttgtatgtgatggagttgttg
caggaccaggagaagggccatgccagcttcacagccgtgtctgagttcctgctcacacac
cctgtactcagctttggtgttcaggacgtcagccacagccgcctgcgccacacagaggtc
ctccccccagatgaggagagcgagagtatgactgcagagggcatccagggcccaatggaa
tccagagctgggatccaaataaagctatactgtgtccacacaaagtctcttcaagatgtg
cagatctggttccagccaaaccttgggtctggctcgtccttatttctgcctcactcaaac
gatggctttggtttttcggatcacttgacagacatgagcatggaaggtttgagctctgat
aaggagtccggatgtggctcccaaaatgatctccggaagattcccgcccttcctgctcct
gctgacttcatgtcccccgctggcgccgccgctatgcctaagctcatgacccctgacgcc
ttcatgacccccagtgcttcagtcccagcctccccaggcagcagtgccagcagcctgaaa
attgtgacagccatgaccagcaactctgacagtggcgccaggggaggagaggagctgacc
cagaaccccaagatgtctgtggagagcagcagcagtagcagtctgaccctcagtgtgagc
accagcagccccagagccagctcccttctcatctcaggcctaggggacaacatgccggtg
cttccctctccaaacccgcccctctcgctggacccacaggccattgagcctatgctgatt
cagcatgcctctcccaccctggctcgctctccagacgtcatctcatctgcctccacggcc
atgtcccaggacatccctgagatcgcctctgagacgctgcagcgaagcctgggggttgtg
tctggagctgaatcccgagaccctctcccagccctccacacagacagcatggcttctgca
gcctcagcccttcaccacctctctccacggaaccggaacaactctgaccacggccacctg
accctggagctgggtgctggagcagtggaggtggagcagaggctcagtaacactccttca
ctactggagaatgccttgtcacaggagaatgctgctgcagccgccgctgcctcctgctct
gacaacaacacaagccacccctggcctgcagctcccgacatcacacgggaaacgcgcaac
agcctgcgggacaacggcctaggagactgctcaagggaggaaatgaaggacagacacatg
tcctctccataccacagacgcacctaccacttaacccagaatgacagtcaggacgccagt
gcagaacaaagtgaccatgatgacgaggtggccagtctagcgtcgtcctccgggaactgt
ggagccaggtcgtctcaaagactgccagtgaaggagtggaagagctctcccagaggctcc
cctaaactcaagaggaagagtaaaaaagatgatggggatgcctctcagtccaggcagcct
gagcatcataatcatcaacatcagatgaaccctgaggtgcaggaagagctgctgatgctg
ctgcgtaaccagcagagggagctagcggatctccgtcagagtcagctagagctgctgcag
agagtgacgggccacatggacgccgtgcagagctctgtcatagcccatgtggagcacgtc
atggtcagccagcaggagcatgaacagaggagaatggagagaatcctagcagagggacag
aaccgtaaccagcaactccaggaacatctctcccagcagctggctcaaactctcaacaac
accctgtgtaaccgtctggacaagactctccgagaggagatgaagaaatctgttcctccc
actattatcaagagtctggagcctgttactgcccagatgaataacaccatcgctgctaag
ctgacggctgtggaggcagcactgaaggagaacgttagcaaagtcgtcaagtcaaagaac
accacagatgcaatcggccgggcagctgctgaggcaatgcaggggcctatccaggctgcc
tacaaggatgcgttccagagcattgtgctgcctgtgtttgagaggggctgccagtctatg
ttccagcagatcaatgacagcttcaagcagggcacccatgagtatatccagcaactggag
acccatgtgaagagcaggaagcagcatgagcaggagggccaggaccctatgattggccag
ctgcagcagatgattgacacgttccagaattctacggatcagctggccaccactgtcaca
gcaagtgtccgctcggaggtccagcaccagctcaacatgacggtgggaaacctgcaggaa
tcgatcctgacccaggtgcagcgcatagtgaagggtgaggtgagcatggccatgaaggag
cagcaggcagctgtgacctccagcatcatgcaggccatgcgctctgctgcaggcacgccc
gtccctaccccactcctcgactaccaggcccagcaggccaacatattgcagctgctgcag
cagggacagctcaaccaggccttccaacaggccctgtcagcctctgacctgaacctggtt
ctgtatgtgtgcgagaccattgactcccagcaggtgtttggccagcatccctgccccctg
atccagccagtgctgctgtccctcatacagcagctgtccactaacctggccacacgctct
gagctcaagatcagttacttggaggatgctgtgatgaacctggaccatggtgatccggtg
acgagagaccacatgagtactgtgctgtcccaggtccgacagaaactgttccagttcctg
cagcaggacccacacagtcctcttagcaagagagcccggcgcctggtgatgatgcttcag
ggccttgtcaatcactag
DBGET
integrated database retrieval system
