Oncorhynchus tshawytscha (Chinook salmon): 112252394
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Entry
112252394 CDS
T05605
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112252394
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112252394
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112252394
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
112252394
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
112252394
NCBI-ProteinID:
XP_024279340
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Position
LG06:complement(30273951..30537122)
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AA seq
526 aa
AA seq
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MESPPDPASDPANSASEPATPARETPVNLETLRKADHPAPVRRQTCSSTNRGGLTNKQGI
SVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLI
DRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQAQRDHQQQPG
EAEPLTPTYGLSANGLTELHDDLSGYMDSHTPDGSKPDSAVSSFYLDIQPSPDQSGLDIN
GIKPEPICDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQ
MTWQAFLQEEMESYQTKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK
AGSLEVVFVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSE
DEIALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTL
RALCSRHTEKLTAFKAIYPDIVRSHFPPLYKELFGSDFEQSMPIDG
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcaagcgacccggccaacagcgcctccgagccggctacc
ccggccagggaaaccccggtaaacctggagacgctccgaaaagcggaccatccagcccct
gttcgaaggcagacctgttcaagcaccaacagaggtggactcacgaacaagcagggtatt
tcagtaacaaagaagacacatacctctcaaatcgaaataattccctgcaagatctgtgga
gacaaatcatcaggcatccattacggtgtgataacatgcgaaggctgtaagggcttcttc
aggaggagtcaacagagcaatgcggcctactcatgcccccgtcagaagaactgcctgatc
gaccgcaccagccgcaaccgctgccagcactgccggctgcagaagtgtctggcagtgggc
atgtcacgggacgcggtgaagtttgggcgcatgtcgaagaagcagcgggacagcctgtat
gcggaggtgcagaaacaccggctgcagcaggcgcagcgtgaccaccagcagcagcccggc
gaggccgagccactcacacccacctacggcctctcggccaatggcctcacagagctccac
gatgacctcagtggctatatggacagccacacccccgacggcagcaagcccgactcagca
gtcagcagcttctacctggacatccagccctcccctgaccagtccggcctggacatcaat
ggcatcaagcctgagcccatctgcgacttcgcccccggctcaggcttcttcccctactgc
tcctttaccaacggagagacatcccccaccgtgtccatggctgagctagagcacctggcc
cagaacatctccaagtcccacatggagacgtgtcagtacctgagagaggagctgcagcag
atgacctggcaggccttcctgcaggaggagatggagagctaccagaccaagccccgggag
gtcatgtggcagctgtgtgctatcaaaatcacagaggccatccagtacgtggtggagttt
gccaagcgcatcgacggcttcatggagctgtgtcagaacgatcagatagtgcttctgaaa
gcaggctctttggaggttgtgtttgtcagaatgtgccgtgccttcgactctcaaaacaac
acagtctatttcgatggaaagtatgctgggcccgatgtgtttaagtcattaggctgtgac
gatttgatcagctccgtcttcgagtttgggaagaacttgtgttctatgcacctgtctgag
gatgagatcgccctgttctccgcgttcgtgttgatgtctgcagaccggtcctggctccag
gagaaggtgaaggtggagaaactccagcagaagatccagctggcactgcagcatgtcctg
cagaagaaccacagagaggatggcatactcaccaagttgatatgcaaagtgtcaacactg
cgagcactgtgcagcaggcatacagagaagttgacggctttcaaagcaatatacccagac
attgtgcgttcccactttcccccgttatataaggagctcttcggatcggactttgagcag
tccatgcccattgacgggtag
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