Oncorhynchus tshawytscha (Chinook salmon): 112252506
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Entry
112252506 CDS
T05605
Name
(RefSeq) interferon regulatory factor 7-like
KO
K09447
interferon regulatory factor 7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04620
Toll-like receptor signaling pathway
otw04621
NOD-like receptor signaling pathway
otw04622
RIG-I-like receptor signaling pathway
otw04623
Cytosolic DNA-sensing pathway
otw05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
112252506
04621 NOD-like receptor signaling pathway
112252506
04622 RIG-I-like receptor signaling pathway
112252506
04623 Cytosolic DNA-sensing pathway
112252506
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
112252506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112252506
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
112252506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
112252506
NCBI-ProteinID:
XP_042179164
LinkDB
All DBs
Position
LG06:complement(36074493..36084407)
Genome browser
AA seq
416 aa
AA seq
DB search
MQSCKPQFADWLIEQVRTEQYTGLFFIDNNKFRVPWKHNSRKDCSEDDRKIFRAWAVVSG
KINEHPTDKAKWKTNFRSALNSLCRRFKMVEDHSKDSNDPHKVYLVINEYNYENPHIEEI
TLENYGLDCALIPTENTPPGMEHDILNFSNLTLNPLDLNQHTENSIPVHTHHSVPPVLVQ
QPYYQVNPDALLNLPAAHSSLWDLEITISYRGSEMRKTQVSGPRVQLHYQCNALEPNTQP
LCFPSTDGLPDHKQIEYTNCILGSVQRGLLLEVQNTGIYGYRQDKCHVFSSTSNPREAHP
EPRKMPQNEMVQLLSFQQYENDLIAFKENRRGSPDYTIHMCFGEKFPDGKPLEKKLIVVK
VVPLVCRYFHEVAQEEGASSLQNDNISLQISHHNSLMELINATWPDGPQHAMGQYF
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagctgcaaacctcagttcgctgactggctgatagaacaggtgcggaccgagcaa
tacactggtttgttctttattgacaacaataaattcagagtcccgtggaaacacaattct
aggaaggattgctccgaggacgaccgtaaaatattcagggcatgggcagtggtcagtggg
aaaatcaatgagcatcccactgacaaggcaaagtggaagaccaacttccgctctgcactg
aacagcctgtgcaggcgtttcaagatggtggaagaccactccaaggactcaaacgacccc
cataaagtctacctggtcatcaatgagtataactatgagaacccgcacatagaagaaatc
actctggagaactatggccttgactgtgctctcatccctacagaaaacacacccccaggc
atggagcatgatatactgaactttagcaacctaaccttgaaccccctagacctgaaccaa
cacacagagaattctataccggtacacacacaccactcagtgccaccagtcctagtacag
cagccatactaccaagtaaatccggatgccctactcaacctgcctgccgcccactcatcc
ctctgggatttggagatcaccatctcctatagggggagcgagatgcgaaagacccaggtg
tcaggccccagggttcagctccactaccagtgtaatgctctcgagcccaacacccaaccc
ctctgcttccccagcactgacgggttgccagaccacaaacagattgaatacaccaactgc
atcctaggaagcgtccaaaggggtcttctcctcgaggtacaaaacactggtatctatggt
taccggcaggacaagtgccacgtgttctccagtactagcaaccccagagaggcacaccct
gaaccgaggaagatgcctcaaaatgaaatggtacaactgttgagcttccagcagtacgaa
aatgacctgatagcatttaaggagaacaggcgaggctctcctgactataccatccacatg
tgctttggtgagaagttccctgacggaaaacccctagagaagaaactcattgttgtcaag
gtggttcccctggtctgtcgttacttccacgaggtggcccaggaggagggggcatcgtcc
ctccagaatgacaacatcagtctgcagatctcccaccacaacagcctgatggagctcatc
aatgccacctggcccgacggcccacagcacgccatggggcagtacttctag
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