Oncorhynchus tshawytscha (Chinook salmon): 112252516
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Entry
112252516 CDS
T05605
Name
(RefSeq) leucine-rich repeat-containing protein 4C-like
KO
K07523
netrin-G1 ligand
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112252516
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
Mid2
DUF7617
Sp38
Ig_6
DUF4293
DUF6821
Syndecan
Motif
Other DBs
NCBI-GeneID:
112252516
NCBI-ProteinID:
XP_024279568
UniProt:
A0A8C8EMA8
LinkDB
All DBs
Position
LG06:37528886..37673804
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AA seq
645 aa
AA seq
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MLNKMTSSRQQQTMRGPRWNRALSDPLFVLLLALQLLAVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLREVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLGNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLTVIRPGSF
KGLIHLQKLWMMHAQIKTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPASHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGMAAELKCRASSLTSVSWITPNGSIMTHGAYKIRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENVLSYFTTVTVETIEPVHDEGRSTVWQKVGPTP
SAGSWETVSSTSTTTTTARTPLSTRATEKTFTIPVTDLNDSSMTGLDEVMKTTKIIIGCF
VAITLMAAVMLIIFYKMRKQHHQQNHHAPQRTIEIINVDEDCVTGGPAMEGHLNLPPLEH
EHLNHYNTYKSAYNHVSTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgacctcttctcggcagcagcagacgatgagaggtcctaggtggaac
cgggccctgtccgaccctttgtttgtgctgcttctagccctccagctcctggcggtggcg
ggcctggtgcgcgctcagacctgcccctctgtctgctcctgcagcaaccagttcagcaag
gtcatctgcacgcggcgggggctccgtgaggtccccgacggcatatccaccaacacacgc
tacctgaacctgcaggagaacctcatccaggtaatcaaggtggacagcttcaagcacctg
cggcacctggagatcctgcagctgagcaagaaccacatccgaaacattgagattggggcc
ttcaacggcctggctagtctcaacactctggagctgtttgacaaccgcctcaccacaatc
cccaatggggcctttgagtacctctccaagctcaaggagctgtggctgaggaacaacccc
atcgagagcattccctcgtatgcgttcaacagggtgccctcgctacggcggctggattta
ggggaactcaaacgcctctcgtatatctcagagggggcttttgagggcctcggcaacctg
cgctacctgaacctgggcatgtgcaatctgaaggagatccccaacctcatcccactggtc
aagctggacgagctagagatgtcagggaaccagctgacggtcatcagacctggctcattc
aaagggttgatccatctgcagaagctgtggatgatgcatgcccagatcaaaaccattgaa
aggaactcctttgacgacctgcagtcgctggtggagctcaacctggcccacaacaacctc
accctgctgccccatgatctcttcacccccctgcaccacttggagagagtccacctccat
cacaacccctggaactgcaactgtgacatcctgtggctcagctggtggctcaaagagatg
gtgccggccaacaccagctgctgtgcccgctgcagttccccagccagccacaagggacgc
tacataggtgagctggaccagaactatttccactgttacgcacctgttattgtggagcca
ccagcggacctgaacgtgacagagggtatggctgcagagctgaagtgcagggccagctct
ctgacctcagtcagttggattacgcccaatggctccatcatgacccacggtgcatacaag
atccgcatttctgtgctcaacgacggcacgctcaacttcaccaatgtcaccatgcaagac
acgggaacctacacctgcatggtaagcaactcagcaggcaataccacagcatctgccact
ctcaacgtgtcttccacagagaacgtcctcagctactttaccacagtaacagtggagacc
atcgagccagtgcacgacgaggggcgctccaccgtgtggcagaaggtgggccccaccccc
tccgccggatcctgggagactgtgtcgtccacctccaccaccaccacaacggcccggacg
cccctctccacccgggccacagagaagacctttaccatccctgtcacggacctgaacgac
agctccatgacaggcctggatgaggtgatgaagaccaccaaaatcatcatcggctgcttc
gtggccatcactctcatggccgccgttatgctaatcatcttctacaagatgaggaagcag
caccaccagcagaaccaccatgcgccacagcgcaccattgagatcatcaatgtagacgag
gactgtgtgacaggcgggccggccatggagggccacctgaatctgcccccgctggagcat
gagcacctgaaccactacaacacctataagtctgcgtacaaccacgtctccactatcaac
tccatacacagctctgcgcacgaacctttgttaatccgggccagttcgaaagacaatgta
caagagactcagatctaa
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