Oncorhynchus tshawytscha (Chinook salmon): 112252624
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Entry
112252624 CDS
T05605
Name
(RefSeq) laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112252624
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112252624
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
ATG17_like
Motif
Other DBs
NCBI-GeneID:
112252624
NCBI-ProteinID:
XP_024279811
UniProt:
A0A8C8H5A7
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All DBs
Position
LG06:46486793..46521454
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AA seq
1789 aa
AA seq
DB search
MFIFQIATMLSAGTCVLAQVGIPEFSDVCTEGSCYPATGDLLIGRAHQLSSNSTCGLHRP
EPFCIVSHLQDEKKCFLCDSTDVYVKSVVNTTTGHRVENVVTTFAPNRLKTWWQSENGLE
KVTIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKNWQVYRYFAYDCAAAYPAISP
GPMQKVDDIICDSHYSDIEPSTEGEVIFRVLDPAFRIEDPYSPRIQNMLKITNLRVKFTK
LHTLGDNLLDSRMEIKEKYYYAIYDMVVRGNCFCYGHASECAPVDGAGAGDGVEGMVHGH
CMCNHNTMGLNCEKCQDFYHELPWRPAKGRNTNACKKCNCNQHSGSCHFDMAVYVSTGNV
SGGVCDECQHNTMGHNCEQCKPFYYQHPERDIRDPSICEPCNCDPVGSLNGGICDRMTDV
SSGLITGQCRCKPNVEGERCDQCQQAHYGLGDHPLGCLACTCNTLGTVPGGSPCHTDSGD
CFCKSLVTGRDCDQCMPQHWGLSNDMDGCRPCDCDLGGALNNDCSQETGQCACREHMFGR
RCDQVESGFYFIALDHYTYEAEDAKFGPGLTVVQRPRPQDRSPTWTGIGFVNVPEGAYLE
FSIDNIPHSMEYDVLIRYEPQLPDQWEEVLMTVMRPSLISADSRCANTMPDDDNQMISLH
PGSRYMVLPRPVCFEAGMNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHCKNLEIFTGS
VGGDVATNSAWDTFQRYRCLENSQSVVKTPSTDICRNFIFSVSALLHRGAKACQCDPQGA
LSTVCAASGGQCQCRPNVVGRNCDKCAPATFLFGPSGCRPCDCNPQGSEDAFCHEATGQC
VCIPGAYSRQCDRCLPGHWGFPNCRLCTCNGHTEQCDPYSGKCLGCREQTTGHNCERCLD
GYYGDPVLGSGDHCRLCMCPDGPGSGRQFAGECYRGLDSPYQVFCVCSPGYRGARCEECA
PGYYGNPHENGGQCQPCQCNNNIDMLDQESCNVRTGECLKCLYHTEGQRCHGCKLGYYGD
ALTQNCRKCVCNHLGTNPATCPVVGDCHCDLGSGQCQCLPNVVGQHCDQCAPDTWNMASE
TGCDACDCDPNHSFGTSCNELSGQCSCKPGFGGKTCRECRELFWGEPEVKCNACDCDPRG
IAEQQCHKANGHCVCVEGVSGPRCDICTRGYSGTFPYCERCHQCFADWDLVVGQLTNQTH
RLVNKVNTIKASGITRPYKHTIDNMEQSAGAIRTILAQNPATQPLSEIQQLLEQATDLME
KMSNKLNLTEEALAQVSSDDNSTNTKLDSLKEDTQKLDRTVKDLLDQVEFIKNTDIRGAT
DSVTKYYQQSLAADARANASTSGPGNPVESSAILRQATEDKMNDTREEFHRRQEEHAKRL
DDLAGQLETLDLSELNVKTCGSPADASCVDSPCGGLSCVDFEGNRRCGGEGCGGLVTLAN
NAWQKAKDFDQEILTAMEEVDKLAKMVSEAKVKADEAKLSAQNVLLKTNGTKQRVDQSNE
ELRSLIRQIRDFLTQDAADLESIEAVANEVLAMQMPTTPAQLQTLTDEIRERVGDLAHVE
TILNQSSDDIQRAENLLEQARRVSKEATNVRDTAEMVKQVLEEAERAQSAAAKAIKQATT
DIKGTNDLLTSVESETVDSEYKLNNATQRLLRLERDVTLLREKTLNTSLSSEQTEKDAES
INKVAEQVKKDLDSELKDKYSTVEDLITQKAGGVANAKKRAELLQQEAKDLLLQASDKLQ
LLKDLEKSYEDNQKTLEDKANQLVDLEKSIKELLQEISHKVTVYSTCLF
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atgtttatatttcaaattgcgaccatgctatccgcagggacgtgcgtccttgcccaggta
ggcatacccgagttcagcgatgtatgcacggaggggagctgctacccggctaccggagac
cttctcattggcagagcacaccagctctcctccaactccacatgtggcctccaccggccc
gagccgttctgtatcgtcagtcatttacaggatgagaagaaatgctttttgtgtgactcc
accgacgtctacgtcaaaagcgtggtgaacaccaccaccggccaccgggtggagaacgtc
gtgaccacattcgcccccaaccgcttgaaaacctggtggcagtcagagaatggtcttgag
aaagtgaccatccagctgaacttggaggcggagtttcatttcacccacctcatcatgacc
ttcaagaccttccggcctgctgctatggtgatcgagcgctcggctgactttgggaagaac
tggcaggtgtaccgctactttgcatacgactgcgcggcggcataccctgccatatcaccg
gggcccatgcagaaagtggatgacatcatctgcgattcgcattactccgacatagagccg
tcgacagagggagaggtcatcttccgagttttggatccagctttccgtattgaagacccc
tacagccccagaatccaaaacatgttgaagatcaccaacctgagggtgaagttcaccaag
ctgcacaccctgggagacaacctgctggactcccgcatggagatcaaggagaagtactac
tacgccatctacgacatggtggtccggggtaactgcttctgctacggacacgcctccgag
tgcgcccccgtcgacggggctggggctggggatggagtggagggcatggtgcatggccac
tgtatgtgcaaccacaacaccatggggctaaactgtgagaagtgtcaggacttctaccac
gagctgccctggagaccagccaagggacgcaacaccaatgcctgtaaaaagtgtaactgt
aaccagcactcaggctcgtgtcacttcgacatggcagtttacgtctctacgggtaatgtg
agcggcggtgtgtgtgacgagtgccagcacaacaccatgggtcacaactgtgaacagtgc
aagcctttctactaccagcacccagagagggacatccgcgaccccagcatctgtgaacca
tgtaactgtgatccggtgggctcactgaacggcgggatctgtgacaggatgactgatgtg
tcatctggactgatcactggccagtgtcgctgcaaacccaatgtggagggagagcgctgt
gaccagtgccagcaggcccactatggcctgggtgaccatcctctgggctgcctggcctgc
acctgtaataccctggggacagttcctggagggagtccgtgtcatacagactcaggagat
tgtttctgcaaaagcctggtcacagggagagactgtgaccagtgtatgcctcagcactgg
gggctcagcaatgatatggatggctgcagaccatgtgactgtgacctgggtggagccctc
aataacgactgttctcaggagactggccagtgtgcgtgtagagaacacatgtttggccgg
cgctgtgaccaggtggagtcaggcttctatttcattgccctggaccactacacctacgag
gccgaggacgccaagtttggacctggtttgacagtagtgcagagacctcgcccgcaggac
cgtagccccacctggacagggataggttttgtcaacgttcccgagggggcctacctggag
ttctccattgacaacatcccccactccatggagtacgacgtcctcatccgctatgagcct
cagttaccagaccagtgggaggaggtgttgatgacagtgatgcggcccagtttgatttca
gcagacagtcgctgtgccaacaccatgcccgatgacgacaaccagatgatatcccttcat
cccggttcacgatacatggtgctccccagaccagtgtgtttcgaggcagggatgaactat
actgttcgtctgagcctgcccctctactctgcactcagtgacgtccagtccccatataca
cttatcgactcgattgtgctgatgccccactgtaagaacctggagatcttcactggttct
gtgggaggtgacgtggccaccaacagtgcctgggacacgttccagcgttaccgctgtctg
gagaacagccagagcgtagtgaagaccccgtccacagacatctgccgtaacttcatcttc
agcgtatctgctctgctgcaccggggagctaaagcatgccagtgtgacccgcagggcgcc
ctcagcacggtgtgtgccgccagcggtgggcagtgccagtgtcgccccaacgtggtaggc
aggaactgtgacaagtgtgcccctgccaccttcctgtttggacccagtggctgcagaccc
tgtgattgcaatccccagggctcggaggatgcgttctgccacgaggctacaggccagtgt
gtgtgtatccccggggcatacagccgtcagtgtgaccgctgtctgccgggtcactggggc
ttccccaactgtcgcctctgcacctgcaacggtcacacagagcagtgcgacccctactcc
ggaaaatgcctgggctgccgagaacagaccactggacacaactgcgagagatgtctggat
ggttactacggcgaccccgtcctgggttcaggggaccattgtcggctctgtatgtgtccg
gatgggcctggaagcgggcgacagtttgccggtgaatgttaccgcggtctggactcccct
taccaggtgttctgtgtctgcagccccgggtacagaggtgccagatgtgaggagtgtgcc
ccaggttactatggaaacccccatgagaacggtgggcagtgccaaccctgccagtgcaac
aacaacattgacatgctggatcaggagtcctgtaatgtcagaacgggtgaatgtctcaaa
tgtctctatcacaccgagggtcagcgctgccacggctgcaagctgggttactatggagat
gccctcacacaaaactgcagaaagtgtgtttgtaaccacctgggcaccaatccagccacg
tgcccggtggtgggtgactgccactgtgatctgggcagcgggcagtgccagtgtctaccg
aatgtggtgggtcagcactgtgaccagtgtgcccccgacacctggaacatggccagcgag
acgggctgcgacgcctgcgactgtgaccccaaccactcgtttgggacttcctgcaatgag
ctgagtggccaatgctcctgtaagcctggctttgggggtaaaacgtgtcgggagtgcaga
gagctgttctggggagaacctgaagtgaaatgcaacgcatgtgactgtgacccgcgaggc
atcgccgagcagcagtgccacaaggccaacggtcactgcgtgtgcgtggagggcgtgtct
ggtccccgctgtgacatctgcacccgtggctactctggcaccttcccctactgcgaacgc
tgccaccagtgcttcgccgactgggacctggtcgtgggtcagctgaccaatcagacccac
aggctggtcaacaaggtgaacaccatcaaggccagcggcatcaccagaccctataaacac
accatagataacatggagcagagcgccggggccataagaactatcctggcccagaacccg
gctacacagccactgtcagagatacagcagctactggagcaggccacagatctaatggaa
aagatgagcaacaagctgaacctcactgaggaggcgctggcccaggtatcatctgatgac
aacagcaccaacaccaaactggactcactcaaagaggacacccagaagctggatcgcacc
gtcaaggatctgctggaccaagtggagttcatcaagaacactgacattcggggagcgaca
gacagtgtcaccaagtactaccagcagtctctggctgcagatgctcgcgccaacgcctcc
actagtggcccaggtaaccctgtggagagctctgccattttacggcaagccacagaggac
aagatgaacgacaccagggaggagttccacaggaggcaggaagaacacgccaagagactg
gatgacctggcaggacaactggagacactggacctatcagaactcaacgtgaagacgtgt
ggcagcccagctgatgcgtcgtgtgtggactctccgtgcggggggttgagctgtgtggac
ttcgaggggaacaggaggtgcggtggcgaagggtgcggcggtctggtcaccctggccaat
aacgcctggcagaaggccaaggactttgaccaggagatcctcacggccatggaggaagtg
gacaagctcgccaaaatggtgtcggaggccaaggtgaaggcggatgaggctaagctgagt
gcccagaacgtgctgctgaagaccaacggtaccaagcagcgtgtggaccagagcaacgag
gagctgcgcagcctcatccgacaaatcagagacttcctcacacaggatgcagcggacctg
gagagcattgaggcagtggccaacgaggtgctggccatgcagatgcccaccacaccagcc
cagctccaaaccctgacagacgagatcagggagagagtaggagacctagcccacgtggag
accatccttaaccagagctccgacgacatccagagagccgagaacctactggagcaggca
cgcagagtcagtaaagaggcgacaaacgtgagggacacagcagagatggtgaagcaggtt
ctagaggaggctgagcgtgcccagagcgcagcggccaaggccatcaaacaggccaccact
gacatcaaaggcaccaatgacctcctgacctcagtggagtcggagacagtggactcggag
tacaagctgaacaacgccacccagaggttgctgcggttagagcgcgacgtcacgctgctc
agagagaagacactgaacacctcactcagctctgaacaaactgaaaaagacgcagagagc
atcaacaaagtggctgagcaggtcaaaaaggatctggactcggagctgaaggataagtac
agcaccgtggaggacctgatcacacagaaggccgggggtgtggccaacgccaagaagagg
gcggagcttctacagcaggaagccaaagacctgctgctacaggccagcgacaagctgcag
ctgctgaaagatttagagaagtcgtatgaggacaaccagaagactttggaagacaaggcc
aaccagttggtggatctggagaagtccatcaaagagcttctgcaggagatcagtcacaaa
gtcactgtctacagcacctgtctgttttaa
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integrated database retrieval system
