Oncorhynchus tshawytscha (Chinook salmon): 112252637
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Entry
112252637 CDS
T05605
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112252637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112252637
03036 Chromosome and associated proteins [BR:
otw03036
]
112252637
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112252637
Coactivators
SAGA/TFTC/STAGA complex
112252637
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
112252637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
AreA_N
Motif
Other DBs
NCBI-GeneID:
112252637
NCBI-ProteinID:
XP_024279836
LinkDB
All DBs
Position
LG06:47365321..47397502
Genome browser
AA seq
999 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATCSDIKREGSTGTVSQFSGK
VRDQVGSLEPPQQGHPKAALNAEPCANQAISNKSITASTSSITTGGIINAGTNLQTHGAA
SRIISPAPPGSVTLPAQTTSYNRGTVLGPAETSVVTAPNSNLTTTTAIRTPSPGLQSFNS
SPGAVKLVNSPAAAPQIGLGGNTVISTASAGNSNIIVSMASQPPSLPNYPVSQSAVAFVT
PTVALQRHPNPMASASQNGVIDPKVSAVVTQGAGSPGATTSQVMNRNNTLINTTMVAPNQ
PVSTGQSIILGGSPSPVVVNSPISQAQSVASPTLAAGVKPTVNGVGQPTVTIVRPPGAPV
MATSVQQQRPGLVASPTRTVAPQMVVRPPQQTTIQLPPGFTIPPGMVLVRTDTGQLVMVP
QQVLAQAQAKTQQGQAAVSNICPRPATPTAGTTIRVGTPSQAPCTTQAVRLASPVQARML
QSPSPTSSAIQKAITMAPAGASVSVKMTTPQKAQSVITGGQALAKPGAVRPTAAAASAST
TPTMVTAPVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKGLVQDLLDAKIEPEE
FTTRLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQTLLASTNASALAAASTTTTSAIR
ARLPTTISPATGIVRTPTTSLGVRRPGVQGVQTRMPMVIPQTIRPQGTVARGLTIIAGRS
PVGIGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELVGTKIR
SCKDEAFLPPGLLHRRIMETAKRFGVTEVPAEAVNYISHATQARLRSVLEKVSTIAQHRT
DGGKDEEWYEPSTDVRAQLRFFEQLDRMEKQRKDEQEREVLLKAAKSRARQEDPEQARLK
AKAKEMQQAEQAQIRQREANLTALAAIGPRKKRRMDSPGSSTSGTEVALGSGAGSSTAAS
SRQQLRQRITRVNLRDFIFCLEQERVTSRSLLLYKALLK
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagca
gtaagtgacttagttggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatgttccgatatcaagcgagaaggatctacgggcactgtcagccagttctcagggaaa
gtgcgtgatcaagtggggtctctggagccgccacaacaaggacacccaaaagcggcgtta
aacgcggaaccctgtgcgaatcaggcaatttcgaacaagagtatcaccgcttctacctct
tccatcactactgggggcattataaacgctggtaccaatttacaaacacatggagccgca
tctcgcatcatttcccccgcaccaccaggatcggtaactttgcctgctcagacgactagc
tacaacagagggactgttttgggtccagctgaaacatcggtggtgactgctccgaactca
aacctcacaacaacaacggctatcaggactccttcacctggattacagagttttaacagt
agccccggagctgtgaagttggtcaactcgccagctgctgctccccaaatcgggttaggc
ggcaacactgttataagtactgccagtgcaggcaactcaaatatcattgtgtctatggct
tcacagcctccttctctaccaaactatcctgtatctcaatctgctgtggcatttgttact
cccactgttgcattgcaaaggcatcccaaccccatggccagtgcctcacagaatggagta
atagaccctaaggtttctgcagtggtcacacagggtgcaggttctccgggggccaccacc
tctcaggtcatgaaccgcaataacactcttattaacactacaatggtggcacccaaccag
ccagtctctactggccaatcaatcattctcggagggtctccctctcctgttgttgtgaac
tcacccataagccaggcacagagtgtggcgagtcccactctcgcagccggggtgaaacca
acggttaacggagttggtcagcccacggtgaccatcgtgaggccccccggtgctcctgtg
atggccacctccgtgcagcagcagagacctgggctggtagcgagtcccacgaggactgtg
gcaccacagatggtcgtcagaccaccacagcagaccaccattcagttaccccctggattt
accatacctcccggtatggtgctggtgcgtacagacacaggccagctggtaatggttcct
cagcaggttctagcccaggctcaggctaagacccaacaaggccaggctgctgtctctaac
atctgcccccggcctgctacacctaccgctgggaccaccatcagagtcggtactcccagc
caggccccttgtacaacccaggctgttcgtctggcctcccctgtccaggccagaatgttg
cagtctccctctcccaccagctctgctatacagaaggcgataaccatggctcctgcaggt
gcgtctgtgtcggtgaagatgaccacccctcagaaagcccagtcagtgatcacagggggt
caagccctggccaagcctggtgctgtacggcccactgcagcagcagccagtgcctccaca
acccctacaatggtaactgcaccagtctcccaggaaatgcaagaaaatgtgaagaagtgc
aagaacttcctgtccaccctgatcaagctggcgtcccacaactccccatctccagacaca
tccaagaacgtcaagggcctggtgcaggatcttctggatgctaaaatcgagcctgaggag
ttcaccacacgtctgcaggctgagctgaagtcctctccccagccatacctcatccccttc
ctcaagaaaagccttcctgccctgcggctgtccctgctcaacaaccagcagactctgctg
gcctccaccaacgcttctgccctggccgctgcctccactactaccaccagcgctatcagg
gcccggctccccaccaccatcagccccgccacaggcattgtcaggacacccaccacttct
ctgggtgtgagaagaccaggggttcagggggtccagactcgcatgccgatggtcatccct
cagaccatccggccacaaggcacagttgcaagaggactcactattattgcaggcagatcc
cctgtgggcattggtgcccaggcctctgccaatcagaagaagctgaatgagcctggaggc
gggacgttcagggatgatgatgacatcaacgacgtggcgtccatggcgggggtgaacctg
aacgaggagaacgcccgcatcatggccaccaactctgagctggtgggcaccaagatccgc
tcctgtaaggacgaggccttcctcccgccaggcctgctgcacagacgcatcatggagacc
gccaagaggtttggggtgacagaggtcccagctgaggcagtgaactacatctcccatgcc
acccaggccaggctgagatccgtgctagagaaagtgtcaactattgcccagcaccgcact
gacgggggcaaggatgaggagtggtatgagccgtcgacagacgtcagggcccagctccgc
ttctttgagcagctggacaggatggagaaacagaggaaggacgagcaggagagggaggtc
ctactcaaagctgccaagagtcgcgccaggcaggaggacccagagcaagctcggttgaag
gcgaaagctaaagagatgcagcaggcagagcaggcccagatccggcagcgcgaagccaac
ctcactgccctggctgccatcggtccccgcaagaaacgcaggatggactcgccagggagc
tccacatcgggcacagaggttgctttgggttcaggggctggctcttccacagccgcctcc
tcccgccaacagctccgtcagcggatcacgcgagtcaatctcagggactttatcttctgc
ctggagcaggagagggtcacatcccggtccttactgctctataaggctctcctgaagtag
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