Oncorhynchus tshawytscha (Chinook salmon): 112252645
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Entry
112252645 CDS
T05605
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator-like
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw02010
ABC transporters
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112252645
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112252645
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
otw02000
]
112252645
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
112252645
Transporters [BR:
otw02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
112252645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
SMC_N
AAA_21
RsgA_GTPase
DUF87
AAA_29
AAA_16
T2SSE
FtsK_SpoIIIE
nSTAND3
MMR_HSR1
AAA_23
Dynamin_N
NB-ARC
ATP-synt_ab
AAA_30
DO-GTPase2
MeaB
Zeta_toxin
nSTAND1
NTPase_1
Motif
Other DBs
NCBI-GeneID:
112252645
NCBI-ProteinID:
XP_042179264
LinkDB
All DBs
Position
LG06:complement(47816057..47860234)
Genome browser
AA seq
1519 aa
AA seq
DB search
MQKSPVEDANFLSKYVFWWTSPLLRKGFRKKLDLTDVYKAPSFDLADNLSERLEREWDRE
VASAKKKPRLLRALSRCFLWPFVFYGILLYFGEASKAVQPQLLGRIIASFDPFHAPEREQ
GYYLALGLSLLFITRFLLLQPAIFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTGQ
LVSLMSAHLNKLDESLGLAHFVWITPLQCILCVGLIWELIEVNGFCALAALTLLGIVQAC
LSQKMGPHRQKRAGMISRRLALTSEIVENIHSVKAYGWEEVMETIIKNIRQDEMSLTRKI
GSLRYFYSASYFFSAILVIVSAIVPHALSKGIILRRIFTTASYCMVLRMTLTRQLPGSIQ
MWYDTLALVTKIEEYLCKEEYKVLEYNLTTTEIELVNVTASWDEGIGELFEKIKQENKAN
GHPNGDAGLFFTNLYVTPVLKNISLYLEKGQMLAVAGSTGSGKSSLLMMILGELVPSEGK
IRHSGRISFSPQTSWIMPGTIRDNILFGLTYDEFRYTSVIKACQLEEDLALLPEKDKTPL
MEGGVTLSGGQRARIGLARAVYKDADLYLLDSPFTHLDIVTEKEIFERCLCKLMSSKTRI
VVTSKLEHLKRADKILLLHNGVCYFYGSFSELQAKRPDFSSLLLGLEAYDNINAERRSSI
LTETLRRVSIDESAVFRGPEPIHQSFRQPPPPIICTNNGPQAITIAGGDGLIAAEKRKQS
LILNPLAPARKFSFIGAGSQKAQAPPPGSTTIEDAVRELSERKFSVVPEDDQVEESLPRG
NQYHHGLQHLSGQRRQSVLQFITNARVEGRREQLQTSFRKKLSITPQCELASELDIYARR
LSKDSVYDISEDVDEQDMEQCFADERENVFDTTSWNTYLRYIFTNRNLVYVLIFIFLIFA
VEVAGSVLGIFLITDKIWTEEANPSAPNFVDQQHANASSPAVQKPVIVTPTSAYYIIYIY
VATSESVLALGFFRGLPLVHTLLTVSKRLHEQMLTAVLRAPMAVLNTMKTGRIMNRFTKD
MATIDDMLPLALFDLIQLTLIVLGAIFTVSIMRPYIFIAAIPLAVIFVVLRKYFLRTGQQ
LKQLEAEARSPIFSHLIISLKGLWTIRAFGRQSYFETLFHKALNTHTATWFHYLATLRWF
LFRCDIIFVFFFSAAVFIAVGTNQDKPGEIGIIVALAMLILGTFQWAVITSITVDGLMRS
VDRVFKFIDLPQEEPRPSGGGGKGTDLVIDNPHAQDCWPNQGHMDVQGLTVKYTEAGRSV
LQDLSFTVEGGQSVGVLGRTGSGKSTLLSALLRLASTDGEISIDGVSWNSVTLQTWRKAF
GVVPQKIFILTGTFRMNLDPHARYSDEELWCVAEEVGLKSVIEQFPDKLDFQLEDGGYVL
SNGHKQLMCLARSILSKARILLLDEPSAFLDPITLQVLRKTLKQSFSNCTVILSEHRVEP
LLECQSFLMIEGSSMKRYDSIQKLLNETSHLKQAMSAAERLKLFPLHRLNSSKRPPQSQP
PKITALQEVAEDEVQNTHL
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcacccgtggaagatgcaaacttcctctccaaatatgtattctggtggaca
tctccactgttgaggaagggcttcaggaagaagttggatttgaccgatgtttacaaagca
ccgtcgtttgatctggcggacaatctttctgaacgactagaaagagaatgggaccgagaa
gtggcatcggccaagaagaagcctcgtcttctgcgggcgctctcccgttgtttcctctgg
ccttttgtgttctacggaatcctgctgtactttggggaggcgtcgaaggcagtgcagccc
cagctcctgggtcgtatcattgcctcgttcgacccctttcatgccccggagcgggagcag
ggctactacctggccctgggtctcagtcttctcttcatcactcgcttcctgctcctgcag
ccagccatctttgggctgcaccacctgggcatgcagatacgcatcgctctcttcagcctc
atctataagaagactctgaagctgtccagccgggtcctggacaagatcagcacaggtcag
ctagtcagcctgatgtcagcccatctcaacaagctggatgagagccttggcctggcccac
tttgtgtggatcacccctctgcagtgcatcctgtgtgtggggttgatctgggaactgatc
gaggtgaatggtttttgtgccctggctgccctcaccctgctgggcatcgtacaggcctgc
ctctcacagaagatgggacctcacaggcagaaaagagcagggatgatcagtcgtcgcctg
gctctgacctccgagatagtagagaacatccactcagtgaaggcctacggctgggaggag
gtgatggagaccatcatcaagaacatcagacaggatgagatgtcattgacgcggaagatt
ggttctctgcgttacttctacagcgcctcctacttcttctctgccatcctggtcatcgtg
tcagccattgtgccacacgccctcagcaagggcattatcctgaggcggatcttcaccact
gcctcctactgcatggtgctccgtatgaccctcaccagacagctgcccggctccatacag
atgtggtacgacacgctggcgctggtcacaaagatagaggagtacctctgcaaagaggag
tacaaagtattggagtacaacctgaccaccactgagatagagttggtgaatgtgaccgcc
tcctgggatgaaggtatcggggagctctttgagaaaattaagcaggagaacaaggctaac
ggccaccctaacggtgacgcagggttgttcttcacaaacctgtatgtcacacccgtcctc
aagaacatcagcctgtacctggagaagggacagatgctggccgtggctggatccaccggc
tctgggaagagttccctactgatgatgatcctgggggagctggtcccgtcagaggggaag
atcagacacagtgggcggatctccttctccccccagacctcctggatcatgcccggaacc
atccgtgacaacatcctgtttggcctgacctacgacgagttccgctacacctctgtcatc
aaggcctgtcagctggaggaggatctggccctgctgccggagaaagacaagacgcccctt
atggagggaggggtgaccctaagtggaggtcagagggcgaggataggcctggccagagct
gtgtataaagacgccgacctctacctactggattcaccttttacccacctggacattgtg
actgagaaagagatctttgagaggtgtctgtgtaaactgatgtcttccaagactcgcatc
gtggtcactagtaagctggagcacctgaagagagcggacaagatccttctgcttcacaac
ggagtgtgttacttctacggctccttctctgagctgcaggccaagagaccagacttcagc
tccctgctcctgggcctggaggcctacgacaacatcaatgccgaacgccgcagctccatc
ctcaccgagaccctccgacgtgtctctatcgatgaatccgccgtcttccgtggccccgaa
cccatccaccagtccttccgccagcccccgccaccgatcatctgtacaaacaatggtcct
caagccatcaccattgccgggggcgacggtctcatagcagcggaaaaacgtaaacagtca
cttatccttaatccgttagcgccggcccgtaaattctccttcatcggtgcgggatcccag
aaagcccaggctcctccacccgggtccaccactatcgaggatgccgtgcgagagctgtca
gagaggaagttctcagtggtgcccgaggacgatcaggttgaagagtcgctgccacggggg
aaccagtaccatcatggcctgcagcacctgagcgggcagcgccgccagtctgtgctgcag
ttcatcaccaacgcccgggtggagggcaggagggagcagctccagacgtctttcaggaag
aagctgtccatcacgccgcagtgcgagctggcctctgagctggacatctacgcacgacgc
ctgtccaaagatagtgtctatgacatcagcgaggatgtggacgagcaggatatggagcaa
tgctttgcagatgagcgcgagaacgtgtttgacacgacgtcgtggaacacctacctgcgt
tacatcttcaccaacaggaacctcgtctacgtcctcatcttcatcttcctcatcttcgcc
gtagaggttgctggctctgtcctggggatatttcttatcacagataagatctggacagag
gaggccaacccgtcggcgcctaacttcgtagaccagcaacacgccaacgcctcgtcgccc
gccgtccaaaagccagtcatcgtcacgccgaccagcgcctattacatcatctacatctac
gtggctacgtcggagagcgttctggcgctggggttcttcagaggcctgccattggtccac
actttactgaccgtgtccaagaggctgcatgaacagatgctgaccgctgtgctcagggcc
cccatggctgtactcaacactatgaagactggtcggatcatgaacaggttcaccaaagac
atggccaccatcgacgacatgcttccccttgcactgtttgacctcatccagttaactctg
atcgtgctgggtgccatattcactgtgtccatcatgaggccgtacatcttcattgccgcg
atcccattggccgtcatattcgtggttctgaggaagtactttctgcgtacgggacagcag
ctcaaacaactggaggctgaggcccgtagcccaatattctcccacctcatcatctctctg
aagggtctgtggactatacgtgcatttggtcgtcagtcctactttgagacgttgttccac
aaggccctgaacacccacacggccacctggttccactacctcgcaacgctgcgatggttc
ctcttccgctgtgacatcatcttcgtcttcttcttctcagccgcagtcttcatcgccgtg
ggaaccaaccaggacaagcctggggagattggcatcatcgtggccttagccatgctcatc
cttgggacgttccaatgggctgtcattaccagcatcactgtggacggactgatgcgatcg
gtagaccgggtcttcaagttcatcgacctgcctcaagaggagcccagacccagcggtgga
ggtggtaaaggaacagacctggtgatcgacaacccccacgcccaggactgctggcccaat
cagggccacatggacgtccaaggactgaccgtcaaatacacagaggctggacgctccgtc
ctgcaggacctctccttcactgtggaaggaggacagagtgtgggtgtgttggggaggacg
ggctcaggaaagagcaccctgctatcggccctcctgcggctggcctctacagacggagag
atctccatcgatggggtctcctggaactcggtcaccctacagacctggaggaaagccttc
ggcgtggtgccacagaaaatcttcatcctgactggtacattccgtatgaacctggatcca
cacgctcgctacagtgacgaggaactgtggtgtgtggctgaggaggtgggtctgaagtcc
gtgatagagcagttcccagacaagctggacttccagctggaggatgggggttacgtcctg
agtaacggacacaagcagctcatgtgtctggcccgctccatcctcagcaaggcccgcata
ctgctgctggacgaacccagcgccttcctcgaccccataaccttgcaggtcctgaggaag
accctgaaacagtcgttctccaactgtacagtcatactgtcagaacacagagtggaacca
ctgctggagtgccagtccttcctgatgatcgagggcagttctatgaagaggtacgactcc
attcagaagctgttgaatgagaccagccacctgaagcaggccatgagtgctgctgagcgc
ctcaaactcttccccctgcaccgcctcaactccagcaagcgaccccctcaatcccagccg
cccaagatcaccgccctgcaggaggtggctgaggacgaggtccagaacacgcatctttaa
DBGET
integrated database retrieval system
