Oncorhynchus tshawytscha (Chinook salmon): 112252686
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Entry
112252686 CDS
T05605
Name
(RefSeq) contactin-1a-like
KO
K06759
contactin 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112252686
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112252686
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
otw00537
]
112252686
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
Contactins
112252686
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
otw00537
]
Others
112252686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
Pur_ac_phosph_N
Sp38
C2-set_2
Fn3_VIN3
Motif
Other DBs
NCBI-GeneID:
112252686
NCBI-ProteinID:
XP_042179282
LinkDB
All DBs
Position
LG06:complement(51353928..51469591)
Genome browser
AA seq
1021 aa
AA seq
DB search
MLHLTVLLLFLLSLTFPSTDASVFGGEPGFYGDDATGYGPVFEDQPVETIYPEESPEAKI
TMSCRARANPPATYQWRLNSQSIDLDGDNHYTLVGGDLVISNPIKNKHVGNYSCVATNDY
GTVVSREAGVRFGYLDFFSSEEREAVHVKEGQGAVLLCAPPPHYPHELSFRWILNEFPIF
ITLDKRRFVSQTTGNLYISKVDLSDSGNYSCFVSSASIAKSVFSKFIPLVPLTERPIRKY
PADIKVKFPDTYALVGQNVTMECFALGNPIPQIRWKKMNGELPSNHDVSMAGAHLHLYNV
QYEDEGTYECEALNSKGKDWHRARVSVEAFPEWTESINSTEKDISSDYTMSCVASGKPKP
HVQWLKNSYAYDKRDLRFSGLTFKDSGMYQCIAENRHGVIYANAELRVIACAPTFEHNPV
KWRILGAKNGRVVIECKPKAAPKPSFSWSKGTELLFNSTRVLIWEDGSLEILNVTEADEG
RYTCFAENNRGQANSTGSLSITEATKITLAPSNADVTVGENTHMQCAASHDSTLDITFVW
TLDAHTIDIDREGSHYERNLNGGSSGELLIKNTQLKHSGRYTCTAQTPVDNVTASANLVV
RGPPGSPGGVRVEEIRDKSVRLIWSRGTDNHSPISKYTIQCRDSFSQEDWRDATTSPPDV
EGNAESATVVDLFPWTEYEFRVIATNTLGTGDPSSPSPKVTTLEAVPVVAPSDIGGGGGT
SRELTITWTPVQPQYYYGRNFGYIIAFKPRDGYEWRKVTVADPGAKHYVHKDSSILASTE
FEVKVKAFNSKGEGPYSLMAVIYSAQDVPSKAPTSVGARALSATEAIVWWLPVTQHTVEG
YQVRYWRKAEDSETSSQRVVLSSRENQTRLDNMRPDSHYLIEVKAYNAAGYGPPSQHLQI
YTKKAPPSRPPKIISKKLKGTSVNIAWEHVEPLANESTIDGYKVLYRQASKSTGMLFNTG
KRSIDLPMHKDGDYIVEVRAHSEGGDGAVAQIRISGGGVMAAKSLSLASLLLVALLCLMG
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacctcactgtgctcctccttttcctcctgtccctcactttcccctccacggat
gcatctgtcttcggaggggaacctggtttctatggagacgatgctacaggttacgggccg
gtgtttgaggatcagccggtcgaaaccatctaccccgaggagtcgcctgaggccaaaatc
accatgagctgtcgagcacgagccaacccacctgccacataccagtggaggttgaacagc
cagagcatagacctggatggtgataaccattacactctggtcgggggcgacctggtcatc
tctaaccccatcaagaacaaacacgttgggaactactcctgtgtggccaccaacgactac
ggcactgtggtcagccgagaggctggcgtccggtttggatacctggacttcttctcgtct
gaggaaagagaggcggtgcacgtgaaggagggccagggggcagtcctgctctgcgctcct
cctccacactacccacacgagctgtcattccgctggattctgaacgagttccctatcttc
atcacgctggataaacgtcgctttgtctcccagactacagggaacctctacatctcaaag
gtggatttatcagacagtggcaactactcctgcttcgtctccagtgcctccatcgccaag
agcgtcttcagcaagttcatccccctcgtccccctgactgaacgtccaatcaggaaatac
cccgctgacatcaaagtcaagttcccagacacttacgcactggtgggacagaatgtcaca
atggaatgcttcgccctgggaaaccccatccctcagatccgctggaagaagatgaacgga
gagctgccgtccaatcacgacgtcagcatggcgggggcccacctccacctgtacaatgtg
cagtatgaggacgaggggacatacgagtgtgaggccctcaactccaaaggaaaggactgg
cacagggcacgtgtctctgtagaagcattcccggagtggaccgagtccatcaacagtaca
gagaaggacatcagtagtgactacaccatgtcctgtgtggctagcggcaagcccaaaccc
cacgtacagtggctcaagaacagctatgcctacgataagcgtgatttgaggttcagtggt
ctgacgtttaaggactctgggatgtaccagtgtatagcagagaatcgccatggagtcatc
tatgctaacgcagagctgcgagtgattgcgtgcgcccctacgtttgagcacaaccctgtg
aagtggaggattctgggagctaagaacggcagagtggtcatagagtgtaaacctaaagca
gctcccaaaccctcgttctcctggagcaagggcactgaactgctcttcaactctaccagg
gtgttaatctgggaggatggtagtctggaaattctgaatgtgaccgaagcagacgagggg
cgttacacctgctttgctgagaacaatcggggccaggccaacagcacaggctccctctcc
atcacagaggccactaagatcaccttggctccttccaacgcagacgtgacggtgggggag
aatacccacatgcagtgtgccgcgtcacatgactccacgctggacatcacattcgtctgg
accctggacgcccacaccatcgacatcgaccgggagggatcccactatgaacgcaacctg
aatggtggttccagtggagagctgctcattaagaacacccagctgaagcattctggacgt
tacacctgcaccgcccagacccctgtggacaacgtcaccgcatccgccaatctggtagtc
agaggtccgcctgggtctccaggtggggtgcgtgtggaggagatcagggataagagtgtg
cgtctgatctggagccgaggtacagacaaccacagccccatctctaaatacactatccag
tgccgggactcgttctctcaggaggactggcgagatgccaccacatcccctccagatgtg
gaaggaaatgcagagtcggccacggtggtggacttgtttccctggacagagtatgagttc
agggtgatagccaccaacaccctggggacaggagaccccagcagcccctctcccaaagtc
accacgctggaggcagttcctgtggtggcgccctcagacatcggcggcggcggcgggacc
agcagggagctgaccataacttggacgccagtgcagccacagtactactatggacgtaac
tttggctacatcatcgcctttaagccccgggatggctacgagtggaggaaggtgactgtg
gcagaccccggggctaaacactacgtccacaaagactcgtccatcctcgcctccacagaa
tttgaggtcaaagtgaaggccttcaacagcaaaggggaaggaccctatagtctcatggct
gtcatctactctgcgcaggacgtgccatctaaagccccgactagtgtgggggccagggcg
ctgtccgccactgaggccatcgtgtggtggcttcctgtcacccagcacactgtagaaggc
taccaggtgcggtactggaggaaggcggaggacagcgagacgtctagtcagagggtggtg
ttgtccagcagagagaaccagaccaggctggataacatgaggccagactcccactacctc
atagaggtcaaggcctacaatgcagccggatacggaccccccagccaacacttacagatc
tacaccaagaaagcccccccaagccggcctcctaaaataatcagtaaaaagctgaaaggc
acatcagtgaatatcgcctgggaacatgttgagcccttggccaacgagtcaacaatagat
ggctacaaggtcctgtacaggcaggccagcaaatccactgggatgctgtttaacactggg
aagcggtccatagacctgcccatgcacaaggatggggactacatagtggaggtcagggct
cacagcgaaggaggggacggggctgtggcccaaatacgcatctcaggtggaggcgtcatg
gctgccaagtccctcagcttggcctccctgctcctggtggctctgctctgcctgatgggc
ctctga
DBGET
integrated database retrieval system
