Oncorhynchus tshawytscha (Chinook salmon): 112252695
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Entry
112252695 CDS
T05605
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X3
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112252695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112252695
03019 Messenger RNA biogenesis [BR:
otw03019
]
112252695
04121 Ubiquitin system [BR:
otw04121
]
112252695
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112252695
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
112252695
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112252695
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112252695
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112252695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_2
DZR_2
zf-UDP
RDD1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
112252695
NCBI-ProteinID:
XP_024279930
LinkDB
All DBs
Position
LG06:51824668..51864073
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AA seq
933 aa
AA seq
DB search
MGQRPLFISAIGTDSHSDAVLNYSQHMCNSGVARLQEQRTATYCAGMTENGDLSLGLGDR
HNRQQITEQYPVTSRDICSTSPCHRMSHSPEIKDDSMECPLCMEPLEIDDVNFFPCTCGY
QICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTE
NRKHLASVRVVQRNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGP
SASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHE
LGDEAASFTKEEMQAGKHQEYEQKLLQDLYKMNPSFLQTPTCSGEKSKSKSSNSTQRPSN
GKDGWPTLSGYGGKLANGLSEDRKSPPLLDCCLDPEVMTSDGLGLGLGPDAGMGSVQGAA
LSPFSSNCDSNGPSDKPPESIGMVNGETLQQMPNRESPSPPPGLTKPPSSLVVPITVADL
TARSPFEGAAAESQSLFSDNSNFRHPNPIPSGLPPFASSPRGGSDWPMTPEPQSLFASDT
IPVSSSTDWQAAFGFGSSTKQQQDDDLGFDPFDVTRKALADLIEKELSVQDQPSPLGSPS
PFGLHHPGSHHGLHMPLSNPNHFPSSIGPPPRLSQLHHRHISSSFSFPGSQSQSSHHGGS
QAAQAAAARHTWMGMPPSARSNNHLLSHLNHSANAGGGHSNFLDLSMPPQHHSHNTGLGG
IPMSENSSSIDGLNVKEWQDGLRALLPNININFGGLPNSSSSSSSSSSSSMNHMGGPGGL
NGPGGLSHSLSWDGTASWMDPAIITGSIPASAGSSLDCLQEDQNPPHWLKSLQALTEMDG
PALPSLPQQPQNQQHQSLHHNHHHGLLDQASSHPHLHHRAGSGWAPYLPGLTQPTHPNPS
QFHSPPPGFQTAFRPPGQSATELLQSASAGDRH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgggacaaagacctctgttcatctcagccattggaactgactctcacagtgatgctgta
ctgaactactctcagcacatgtgcaacagtggcgtcgccaggcttcaagagcagaggacc
gcaacttattgtgccgggatgactgagaacggtgacctgagtctcggattgggcgacagg
cataaccgccagcaaatcacagaacagtatcccgtgaccagccgtgacatctgctccacc
tcgccgtgccataggatgtcccacagccccgagataaaggacgactccatggagtgccct
ctgtgcatggagccgctggagattgacgacgtaaacttctttccctgcacctgcggctac
cagatctgccgcttctgttggcaccgcatccgcacagatgagaacggcctctgtcctgcc
tgcagaaagccgtacccggaggaccctgcggtgtacaagcccctgtcacaggaggagatt
cagaggataaagaatgagaagaagcagaagcagaacgagaagaaacagaaggtgacagag
aatcggaaacacctggccagtgtcagggtggtgcagagaaacctggtttttgttgtcggg
ctctctcaaaggctcgcagacccagaggttctaaagaggccagagtattttgggaagttt
gggaaaatacacaaggtggtcatcaacaacagcacatcatatgcaggttcacagggtccc
agtgctagtgcctacgtcacttacatccgctctgaagacgccctcagagcaatacaatgt
gtgaacaatgtggtggtggacggtagaacactcaaggcttctttaggcacaacaaaatac
tgcagttacttcctcaaaagcatgcagtgtcccaaaccagactgtatgtatctacacgag
ctgggggacgaggcggctagctttacgaaagaggagatgcaggccgggaaacaccaagaa
tacgagcagaaactactccaggacctctacaaaatgaaccccagctttctacaaacacca
acgtgttcaggggaaaagtccaaaagcaaatcttcaaattctacacaaagacccagcaac
ggcaaggacgggtggccaacactatcggggtatggtggcaaactggccaatgggctgtca
gaggacaggaaatctcctccgctgctagactgctgtctggacccagaagtcatgacctca
gacgggttaggacttggcctggggccggacgcagggatggggtctgtccagggggctgcc
ctgtcccccttctcttctaattgtgacagcaacggtcccagcgacaaacctcctgaatca
ataggtatggtgaatggagagactttacaacagatgcctaaccgcgagtccccttcccct
cccccggggctgactaagccccccagcagtctggtggttcccattactgtagcagacctc
accgcccgctcgcccttcgagggggctgctgcagagtcccagtccctgttctctgacaac
agtaacttcagacaccccaaccccatcccgtccggcctgccccccttcgccagctcgcct
agagggggatccgactggcccatgacccccgaaccacagagcctcttcgcatcagacaca
ataccggtctcctcctccacagattggcaggcagccttcggcttcggctcctctactaaa
cagcagcaggacgacgacctgggcttcgacccctttgacgtgacacggaaggccctggct
gacctcattgagaaggagctgtcagtccaggaccagcccagtcccctggggtcccccagc
cccttcggcctccaccaccccgggtcccaccacggcctccacatgcccctctccaacccc
aaccatttccccagcagcattggacctccaccccgcctctctcagctccaccacaggcac
atttctagctcctttagtttccctggttcccagagtcagagcagtcatcatggtggaagt
caggctgcccaggccgctgcagctcggcatacctggatgggcatgcctccctcggcacgc
agcaataaccacctcctctcacacttgaaccactcggccaatgctggaggaggacatagc
aacttcctggacttgagcatgcctcctcagcaccacagtcacaatacagggctgggaggg
atccccatgtcagaaaacagcagttctatagacggcctcaatgtgaaagaatggcaggac
ggtttgagagctctcctccccaacatcaacatcaacttcgggggtctccccaactcctcc
tcctcttcttcttcctcctcttcctccagtatgaaccacatggggggtcctggggggcta
aatgggccagggggactctcacacagtctcagctgggatggtacggccagctggatggac
ccagctatcatcacaggtagcatcccagcctcagcaggcagcagtttagactgtctccag
gaggaccagaaccctccccactggctcaaatccctccaggccctgacagagatggacggc
cctgcactgccatcactcccccagcagccccagaaccagcaacaccaatccctccaccac
aaccaccaccatggcctcctagaccaggcctcctcacacccacacctccaccacagagca
ggctctggttgggccccctacctgcccggcctgacccagcccacacaccccaaccccagc
caattccacagccctcccccaggcttccagacagccttcagacccccaggccaaagcgcc
acagagttgctacagagcgcctccgccggggaccgccactaa
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