Oncorhynchus tshawytscha (Chinook salmon): 112252747
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Entry
112252747 CDS
T05605
Name
(RefSeq) serum response factor isoform X1
KO
K04378
serum response factor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
112252747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112252747
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
112252747
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
112252747
NCBI-ProteinID:
XP_024280039
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Position
LG06:complement(57423112..57487741)
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AA seq
578 aa
AA seq
DB search
MLPSQAGSAQSGNGSASFRDNRGHGSGVIGIRPVLVRARQSKTRVSDSIGAVGMLRGNGP
GVGARGGARPGNGTGPTIPQTAAQGGIGLNMGIGVRGGSRYDPDKECAPMGCSGSDADSD
SGDEDDPMGSIGDNRRSVKRERLEMEAAVTGQEAGIPPGGYGVVPQGVAGAKPGKKTRGR
VKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQ
PMITSETGKALIQTCLNSPDSPPRNDPSTDQRMSATGFEETDLTYQVSESESLGETKDQL
KPAFTVASLPGTTSTHAPTAPTTSTTMQVSSGPSFPITNYLAPISASSNVNGTVLKTTGA
SGGQVMQLPSGFTFMSAGTSLPPGTPTIPLSQLHQHTMAIPGQRGQKLTASQLTQQGQQA
IFRFPAAVSLGGGMTQQLQAIQVHPTTHTNDSSSEISQTSTVSTATIVTSSVPTSMAGHM
MYTSPHTVMYASSPSAMQVSHGQGQDTGETTLDYSRLRWDTGAVPQVFLTAPSGTMQIPV
SAVQLHPMVIGQQLSSSSSNLTELQVVSLDTTQNTKND
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgctaccaagccaggctggatcagcacaatctggaaacgggtcagcgtctttcagggat
aacagaggtcacggttctggggtgattgggattcgccctgtgttggtcagagcaaggcaa
tcgaaaactcgggtcagcgacagcatcggtgcggtggggatgttgaggggcaacggtcca
ggagtgggtgcaagaggtggggcgagaccagggaatgggacgggaccgacgattccacag
accgctgctcagggaggcatcggtctgaacatgggaattggggttcgcggaggcagccgc
tacgacccggacaaagagtgtgcgccaatgggttgcagtgggtcggacgctgattcagac
tcgggggatgaagacgatccgatgggttcaatcggggacaacagaagaagtgtaaagcgg
gagagactggagatggaggctgcggtgacagggcaggaggccgggataccaccggggggt
tatggtgtggtcccccaaggtgtcgctggcgcaaagccagggaagaagacacgtgggcgc
gtgaagataaaaatggaattcatcgacaacaagttgaggcgatacacaacttttagcaag
aggaagactggtataatgaagaaggcctatgagctttccacgttgacaggaacccaggtc
ctgctactggtggccagcgagacgggccatgtctacacatttgccacgcggaagctccag
cccatgatcaccagcgagacgggcaaggccctcatccagacgtgcctcaattctccagac
tcgcccccccgcaacgacccctccactgaccagcgtatgagcgccacaggcttcgaggag
acggaccttacctaccaggtgtctgagtcagagagccttggggagaccaaggaccagcta
aagcctgcgtttacagtggccagcctcccgggcaccaccagtacccacgcacctacggca
cccaccacatccaccaccatgcaggttagcagcgggccctccttccccatcaccaactac
ctggctcccatctccgctagcagcaacgtcaacggcacagtcctcaagaccaccggtgcc
tccggagggcaggtcatgcagctgcccagtggctttaccttcatgtcagcaggcacttct
ctccctcccggcacccccaccattccgctcagccagctgcaccagcacaccatggccatc
ccgggacagcggggccagaagctcaccgcatcacaactgacacagcagggccagcaggcc
atcttccgattccccgctgcagtctccctagggggagggatgacccagcagctgcaggcc
atccaggtgcaccccaccacacacaccaacgacagcagctcggagatctcccagacctcg
actgtttccactgcgaccattgtcacgtcgtctgtgcccacgtccatggcggggcacatg
atgtacaccagtccccacacagtgatgtacgcgtccagcccctcggccatgcaggtgtct
cacggacagggccaggacacaggtgagaccacgcttgactacagtaggctacgctgggac
acaggtgctgtccctcaggtattccttacggcaccctcgggcaccatgcagatccctgtt
tctgcagtgcagctacacccaatggtgattggtcagcagttgagcagcagcagcagtaac
ctgacagagctgcaggtggtcagcctggacaccacccagaacactaagaacgactga
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