Oncorhynchus tshawytscha (Chinook salmon): 112252805
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Entry
112252805 CDS
T05605
Symbol
pdlim1
Name
(RefSeq) PDZ and LIM domain protein 1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112252805 (pdlim1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112252805 (pdlim1)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
112252805 (pdlim1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Arc_trans_TRASH
Ehrlichia_rpt
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
112252805
NCBI-ProteinID:
XP_024280194
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All DBs
Position
LG06:complement(60496718..60508381)
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AA seq
310 aa
AA seq
DB search
MPLRVVVQGPGPWGFRLVGGRDFEQPLTISRITPGSKAAQASLSVGDQILAIDGEPTESM
THLQAQNKIKGCLEEMILSVDRSETKIWTPLSSEDGKTNPYKMNLASEPQEVKPIGSAHN
RSALPFAGFGPKVVTNQYNNPAGLYSSENIKDFNTAVDDVKTIATAANEPSNIPTVADSE
VYKMLQENQEADEPPRQSASFKVLQEILESDPDKPSGFRSVKAPAAKMVSTVGNANKLPI
CDKCGSGIVGMVVKLRDKFRHPECYTCSNCDVNLKQKGHFFVEDQIYCEKHARERVTPPE
GYDVVTVFPK
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgcctctacgggttgtcgtgcaaggtcctggaccttggggattccgtctagttggtggg
agggattttgaacaacccttgactatctcgcggatcactcctggcagtaaggctgcccag
gccagtctgagtgtcggggatcagatcctggccatcgatggagagcccactgagagcatg
actcacctgcaggcacagaacaagatcaagggctgcttagaggaaatgatcctctccgtc
gacagatcagaaactaaaatctggacaccgctctcttctgaggatggaaagaccaacccg
tacaagatgaatctcgcatctgagccgcaggaggtgaaacccataggttccgcacacaac
aggagcgcgctgccattcgccgggtttggccccaaggtggtaaccaatcagtacaacaat
cctgccggtctctactcctccgagaacatcaaggactttaacacggccgtggatgacgtg
aaaacaattgccactgccgctaacgagcccagcaacatcccaacagtggcagactctgag
gtctacaaaatgctgcaggaaaaccaagaggctgatgagcctcctcgacagtccgcttcg
ttcaaggtgctgcaggagattctggagtcagatcctgataagccctctgggtttaggagt
gtgaaggcccccgccgcaaaaatggtctcaacagtgggaaatgcaaacaagttaccaatc
tgtgacaaatgtggatcggggattgtagggatggttgtcaagttgcgggacaagtttcgt
caccccgagtgctacacctgctccaattgtgacgtcaacctgaaacagaagggacatttc
tttgtggaggaccagatctactgcgagaaacacgcacgcgagcgagtgactccacccgaa
ggctatgacgtggtcacggtcttccccaagtag
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