Oncorhynchus tshawytscha (Chinook salmon): 112252827
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Entry
112252827 CDS
T05605
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112252827 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112252827 (polr1b)
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112252827 (polr1b)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
112252827 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
112252827
NCBI-ProteinID:
XP_024280232
LinkDB
All DBs
Position
LG06:61243832..61255908
Genome browser
AA seq
1134 aa
AA seq
DB search
MDFASKWSSLLTSPSLKHLTEAGYGIPKEKQHAAVQDLTKAHIESFDQAVSEGLCRAVQA
IRPLEFMFKNDRISLAFVEATIFKPVVGKGSICRDLRVFPAECRGRRCSYRGKLVADVSW
SVNGVPKGIIKQSLGQLPIMVKSRLCNLHGLPPKELIEHHEEAEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMSRPKWKNRGQGYTQYGVSMHCVKEEHTAINMNLHYLDNGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREANSFYKSCVSEMLRLVMEEGCITRGKV
LNYLGERFRVKMNLPEWYTHEQCANYLLDQCICIHLKSDVEKFYLLCLMTRKLFTFAKQE
CMEENPDSLMCQEVLTPGRLYLMFLKEKMAAWMVSVKLSMDKRAHRLTGGVSSDNLVKMF
NMGSDVTHPFEYLLATGNLTSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIIAPALPTTTLPALLCSLGVT
PVDGSPGRAYTDCYPVLLDGAMVGWVETDLAPFLADSLRRFKVLKEKKIPPWTEIVLVPQ
TSKASMYPGLYLFTTPCRMVRPVHNLALGKQELIGTFEQLYINVGISEDEIEPGVTTHQE
LFLHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFQDRSDNKLYRLQTPQSP
LVRPVMYDHYNMDNYPIGTNAIVAVISYTGYDMEDAMILNKSSWERGFGHGCVYKTELVD
LAQKMKGEDNLVFGVKPGDPKVMDKLDADGLPSIGAVLQHGDPFYSYINLNTGQTFVNFY
KSQESCVVDNIKVCSNDVGSGRFKRVCITVRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLCHDATPFTFSEENSALEH
FGDMLRAAGYNHYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPYWSATRHRKTVCLLCGKSDSIDTVSVPYVFRYFVAELAAMNIKIKLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcgagtaagtggagtagtttactgacaagtccaagccttaaacatttaaca
gaagcaggctacggcataccgaaggaaaaacaacatgccgctgttcaggacctaacgaag
gctcatattgagtcgtttgaccaagcagtttcagaaggactgtgtcgtgctgtacaggcc
atccgtcccttggagtttatgtttaaaaatgaccggatcagcctggcatttgtggaggcc
accatctttaaaccagtggtgggcaaaggaagcatctgccgggacttgagggtgttccca
gcagagtgcagagggaggcgctgctcctaccgggggaagcttgtggcagatgtcagctgg
tccgtgaatggggttcccaaaggcatcatcaagcagtctctgggccagttgcccatcatg
gtgaagtctaggctgtgtaacctacatgggctccctcccaaagagctcattgagcaccat
gaggaagctgaggaaatgggtggttattttattgtgaatgggaacgagaaggttattcgc
atgctgatcatgccaaggaggaactaccctatcgctatgtcaaggccgaagtggaagaac
agaggccagggatacactcagtatggtgtctcaatgcactgtgtgaaggaggagcacacc
gctatcaatatgaacctgcattacctggacaatgggactgtgatgctcaacttcatatac
cagaaagagctcttcttcctccccctgggctttgcactaaaggctctagtggacttcaca
gacttccagatttaccaggaactgatcaaaggtcgtgaggcgaactccttctacaagagc
tgtgtgtctgagatgctgcgactcgtcatggaggagggatgcatcacccgcggtaaggtg
ctcaactacctgggcgagcgcttccgggtcaagatgaacctgccagagtggtacacccat
gaacagtgtgccaactacctgctagaccagtgcatctgtatccacctgaagtcggacgtg
gagaagttctacctgctgtgtctgatgacgcgcaagctattcacgtttgccaagcaggag
tgcatggaggagaacccggacagtctgatgtgtcaggaggtgctcacgccaggacggctc
tacctaatgtttctcaaggagaagatggctgcctggatggtgtctgtgaaactgtctatg
gacaagagggcccataggctgactggtggggtgagctctgataatctggtgaagatgttc
aacatgggctctgatgttacccatccctttgagtatctgctagccactgggaatctcact
tcaaagactggtctgggcatgctccagaacacgggactgtgtgtagtggccgacaagctc
aacttcatccgctacctgtcccacttccgctgtgtgcacagaggtgcagcctttgccaag
atgaggaccacctctgtacgtcgtctgctgcccgagtcctggggcttcctgtgccccgtg
cacacccccgacggagagccctgcggcctcatgaaccacatgacggcccactgtgaaatc
atagccccggccctacccaccaccaccctccctgccctgctctgctccctcggtgtgact
cctgtggatggttctcctggcagggcctacactgactgctatcctgtgctcctggatggt
gccatggtgggttgggtagagactgatctggcccccttcctcgcagactccctccgcagg
ttcaaggtgttgaaggagaagaagatccctccctggactgagatagttctggttccccag
accagcaaggccagcatgtacccaggcctgtacctcttcaccaccccctgccgcatggtg
cggcctgtccacaacctggccctgggcaagcaggaactgatcggcacctttgaacagctc
tacatcaacgtgggcatcagtgaggatgagatcgagccgggtgtgaccacccaccaggag
ctcttcctccacagcatgctgagcgtggtggctaactttatcccttactcggaccacaac
cagagtcccaggaacatgtaccagtgccagatgggtaaacagaccatgggcttccccctc
cactcgttccaggaccgctcagacaacaagctgtaccgccttcagacccctcagagccct
ctggtcaggcctgtcatgtacgaccactacaacatggacaactaccccatcggcaccaac
gccattgtcgctgtgatctcctacactggctacgatatggaggacgccatgatcctgaac
aagtcgtcatgggagaggggctttggtcatggctgtgtttacaagactgagctggtggac
ctggcacagaagatgaagggcgaggacaacctggtgtttggggtcaaacccggtgacccc
aaggtaatggacaaactggacgctgatgggctgccctccatcggcgcagtgctacaacat
ggagaccccttctacagctacatcaacctcaacaccggacagacctttgtcaacttttac
aagagtcaagaaagctgtgtagtagacaacatcaaggtgtgcagcaatgacgtgggctcg
ggccgcttcaagcgcgtctgcatcaccgtgcgagtgccccgtaaccccaccatcggggac
aagttcgccagccgccacgggcagaagggtatcctgagccgcctgtggcctgccgaggac
atgcccttcacagagagcgggatgacccccgacattctgttcaaccctcacggcttcccc
tcccgcatgaccatcggcatgctcatcgagagcatggccggcaagtcgggcgccctccac
ggcctgtgccatgacgccactcccttcactttctccgaggagaactcggcactggagcat
tttggggatatgttgcgcgctgccggctacaaccactatggcaccgagcgcctctacagc
ggcctcagcggcctggagctagaggcggacatcttcatcggtgtggtctactaccagagg
ctgcgtcacatggtctccgacaagttccaggtgaggaccactggcgcgcgggacaaggtg
accaaccagccggtgggcggaaggaacatccaggggggcatccgcttcggggagatggag
cgcgatgccctgctggcccacgggacctccttcctgctccacgaccgcctcttcaactgc
tctgatcgctctgtggcacaggtgtgtgtggactgtggtagcctactgtcccctctactg
gagaaaccaccaccctactggtcggccacacgccaccgcaagactgtctgcctcctctgc
ggcaagagtgactccatcgatacggtgtctgtgccatacgtcttccgctactttgttgcc
gagctggcggcgatgaacatcaaaatcaaattggacgtgaagtga
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