Oncorhynchus tshawytscha (Chinook salmon): 112252970
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Entry
112252970 CDS
T05605
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112252970
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
112252970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
TOR1L1_N
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
112252970
NCBI-ProteinID:
XP_024280540
LinkDB
All DBs
Position
LG01:complement(51767736..51829325)
Genome browser
AA seq
1860 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKTAAQQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWSPSPKPKEESSADFSPEDSYSDRLSFYRFDISRLLKHGASLLGS
AGAEFEVQDDKSGEVDPKERLTRQRKLLQRKLGLDIGAAIGMDTMELFNDEDLDTQYITP
SGPKAQGQGGTGSGPCSSSHNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRSK
DMDPNERSNDSFDGEPEEKRRKTTNVVIDQPAMEHKVLIDNVPDNSSLLEETQEWPLESF
CEELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVECTAEQMALQHQEWLEDVVIRL
LCVFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMNDSGVAMTVDILLKLLTEDQWEVR
HGGLLGIKYALAVRKDLISAMLPRVLPAITEGLQDLDDDVRAVAAAALIPVVDGFVQLLP
NKVPFIVNTLWDALLELDDLTASTNSIMTLLSSLLTYPQVRQCSMQQSLTVLVPRVWPFL
RHTISSVRRAALETLFTLLSKADQCCALWLNQVLQDMLRHIFQSCILESNQEILDLIQKV
WTELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKARCKEKAGGKPRQGA
LVQVKETVQEYIAGAETVTEDPITRDYVVTRARLMAAKLLGALCRCMCDPQVNSSSQDIR
PAESLGQLLLFHLNSKSALQRIAVALVLCEWAAVQKECQVVSALVQPRLLAILSEQLYYD
EIAIPFTRMQNECKQLISLLADAQIDVRDRLNCSVFTIDQASELVTTIFTESTVGLNMKS
KQFQPLDGKRQQAQSTVGETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAA
KREENTLVQGYAASFIAKLLQQCAGRQPCPNSKIVKNLCSSVCVDPLLTPSSACPVSTTP
ETAKAGMSEKECMHHVVNKTKGIITLYRHQRAAFAITSKRGPTPKTAKTPTTELPPGSTI
TTDTDENKKTCLVQRRGAEFSLMTIARHFGQELTGSLPYLWESMVGPLRAVVEDNEGIDW
KLQMEKGDAAAQDLVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAAR
CVGVLSKIATMETMHLFLERVLPWLGCIEDSTKQEGAIEAMACVMEQLDVDIVPYIVLLV
VPVLGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFLEQLL
DSRKLENYKIPVPIQAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGD
HYLRAQEYAKTKAADSTPLPSLVVCPPTLTGHWVDEVGKFCTKEYLNPLHYTGPPTERAR
LQHQVKKHNLVVASYDVVRNDIDFFRNVKFNYCILDEGHVIKNGKTKLSKAIKQLAANFR
VILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLA
MEALHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVGVEDTI
STASTQEEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRD
IQHSPKLSALKQLLLDCGLGSSGSAEGTEAVVAQHRVLIFCQLKSMLDIVEHDLLKLQLP
TVTYLRLDGSVQASLRHAIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNP
MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANAVISQENASLQSMG
TDQLLNLFTLDKDGKDDKGELSSSGGKASIKNVLDGLGDLWDQLQYDTEYNLDSFMHTLH
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggccgtttcaaggcttgatcgtctttttatcctgcttgacactggaactactccggtg
acgaggaagactgctgcccaacagctgggagatgtggtcaaactccacccacatgagctc
aacaacctgttgtcgaaggtattgacatacctgagaagtccaaactgggacacgcgtatc
gctgcgggtcaagcagtggaggccattgtgaagaatatcccagagtggagcccatcaccc
aagcccaaagaagagtcatctgcagacttttccccggaggactcctactctgaccgtttg
agtttctaccgtttcgacatctcccgcctcctcaaacatggtgcttctctactgggttct
gccggcgctgagtttgaggtccaggatgacaagtctggtgaagtggaccctaaagagcgt
ctcacccgccagaggaagctgctgcagaggaagctgggactggacataggtgccgcaatc
ggcatggacacgatggagctgttcaatgatgaggacctggacacccagtacatcacaccc
agtggccctaaggcccagggacagggagggacgggctctggaccctgctccagctcccac
aaccacgtgcccatgcaggcggcagagataatagactcggagtttcgacctggcatgagc
aaccgacagaagaacaaggctaagaggatggccaagctagtggccaagcagcgatccaaa
gacatggatcccaacgagagaagtaatgacagttttgatggggagcccgaggagaagcgc
aggaaaactaccaacgtagtcatcgatcaaccggcaatggagcataaagtcttaatcgat
aatgttccagacaactccagcctcttagaagagacccaggagtggcccctagagagcttc
tgtgaggagctctgtaacgacctcttcaacccctcatgggagattcgtcacggtgcaggc
acaggcctcagggagatcctcaagtctcaaggtgctggaggagggaagctggtggaatgc
actgcagaacagatggcgctgcagcaccaggagtggctggaggatgtggttatcaggctg
ctctgtgtctttgctctggaccgttttggagactttgtctctgatgaggtggtggctccg
gtcagagagacttgtgcccagacactgggcgtggccttgcgccacatgaatgacagcggc
gttgccatgactgtagacatcttgctgaagctgctgacggaggaccagtgggaggtccgg
cacggaggtcttctgggcatcaagtatgccctggctgtccgaaaggacctgatctccgct
atgcttccgcgggtgctccctgccatcacagaggggctgcaggacctggatgatgacgtc
agagcggtggcagccgcggccctcatccctgtggtggacggctttgtacagctactcccc
aacaaggtcccgttcatagtgaacaccctgtgggatgctctcctggagctggatgacctg
actgcctccaccaacagcatcatgaccctactgtcctcgctgctcacctacccccaggtc
cgacagtgcagcatgcagcagtccctaacggtccttgtccctcgggtctggccattcctt
agacacaccatatcatcagtcagacgggccgcattagagaccctctttaccttactgtcc
aaagccgaccagtgctgcgcgctatggctcaaccaggtcctgcaagacatgctccgacac
atcttccagtcttgcatcctggagagcaatcaggagatcctggacctcatccaaaaggtg
tggacagagctgctgcgccaggcccctcagcagtacgtggtggcagccagctgtccctgg
atgggcgcctggctctgcctgatgatgcaagcctctcacatccccatagacatcaacatg
ttgctggaagtcaaggctcgctgcaaggagaaggctggcggtaagcctcgccagggagcc
ttggttcaggtgaaggagactgttcaggagtatatcgctggggcggaaactgtgaccgag
gacccaattacgagagactatgtggtgacacgggctcgcctcatggccgcaaaactgttg
ggggccttgtgtcggtgtatgtgcgacccgcaggtcaactcctcctcacaggacatccga
ccggctgagtcgctgggccagctgctcctcttccacctcaactccaagtctgccctgcag
cgcatcgctgtggccctggtcctctgtgagtgggctgctgtgcagaaggagtgtcaggtg
gtgtcagccttggtccagcctcgcctcttagccatcctgtcagagcagctgtactacgac
gagatcgccattcccttcacacgcatgcagaacgagtgtaagcagctcatctccctgctg
gccgacgctcagatcgacgtgcgcgaccgcctcaactgcagtgttttcaccatcgaccag
gccagcgaactggtgaccaccatcttcaccgagtccaccgtgggtctgaacatgaagtcc
aaacagtttcagccactggatggcaagcgtcagcaggcccagtccacggtgggtgagacc
agtgtggagtggcagcagctgcacctgcgagtccacatgttcaccgcctgcgctgtggtc
aacttgcaggcgctgccagacaagctgaacccggtggtgcgtcctctgatggaggcggct
aagcgggaggagaataccctggtgcagggctacgccgcctccttcattgcgaagctgctg
cagcagtgtgctggtaggcagccatgtcccaattccaagatcgtcaagaacctgtgttca
tcggtctgcgtggaccccctgctcacgccctcctcggcctgtccggtgtccacgactccg
gagactgctaaagctggcatgtcggagaaagaatgcatgcaccacgtggtcaataagacc
aagggcatcatcaccttgtaccgccaccagagggcagcatttgccatcaccagcaaaagg
ggccccacccccaaaactgccaagacacccaccactgaactgccccccggcagcaccatc
accacagacactgatgagaataaaaaaacctgtctcgtccagagaagaggcgcagagttc
tctctgatgacgattgccaggcactttggccaggagctgacagggtcactgccctacctg
tgggagtccatggtgggacctctgagggctgtggtggaggacaacgaaggcatcgattgg
aagctccagatggagaagggggatgctgcggcccaggatctggtcaactcactgcaggtc
ctggaggtcactgctggggccatggcccccgagctcaaacctctgttgttggagcacctg
ccccacctgttcacctgtctgcagcatccgtacacggccgttcgtcacatggcggcgcgc
tgcgtgggcgtgctcagtaagatcgctaccatggagaccatgcacctgttcctggagcgt
gtgcttccgtggctggggtgcatcgaggacagcactaagcaggagggggccatcgaagcc
atggcctgtgtgatggagcagttggatgtggacattgtgccatacattgtgctgctggtg
gtgccagtgctgggccgcatgagtgaccccagtgacagcgtccgtttcatggccacgcag
tgctttgccaccctcatccgcttgctacccctagaggctggtatcccggaccctcccacc
atgtcggatgatctgattcgccagaaggccagagagcgtcactttctggagcagctgctt
gacagcaggaagctggagaactacaagatccctgtgcccatccaggctgagctccgcaag
tatcagcaggacggagtgaactggctgtccttcctgaacaagtacaagctccacggtatt
ctctgtgatgacatgggactgggcaagaccctgcagtccatctgcatcctggctggggac
cactacctcagggcacaggagtatgccaaaacaaaggcggcagacagcacccccctaccc
tctctggtggtgtgcccccccaccctgacaggtcactgggtggatgaggtgggcaagttc
tgcaccaaagagtacctgaacccactgcactacacgggaccccctacagagcgagcacgt
ttacagcatcaagtgaaaaagcacaacctggtagtagcctcttacgatgttgtacggaac
gacattgacttttttaggaatgtaaaattcaattattgtatcctcgacgagggccatgtg
atcaagaacgggaagaccaagctctcaaaagccataaagcagttggccgccaacttccga
gttatcctatcaggaacgcccatccagaataatgttctggagctgtggtcgctctttgac
ttcctcatgcccggcttcctgggcacagaacgccagtttgctgcccgctacggcaagccc
atcctggccagccgtgatgccaagagctcatcgcgtgagcaggaggccggggtgctggcc
atggaggcgctgcatcgccaagttctgcccttcctcttgaggaggatgaagaaggacgtg
ctgcaggacctgccccccaagatcatccaggactactactgcaacctcagccctctacag
gttcagctgtatgaggactttgccaagtcccgggccaaggtcggtgtggaggacaccatc
tctacagcctccacccaggaggaggagaagcccaagctgaaggccacgggccacgtgttc
caggctctgcagtacttgaggaagctgtgtaaccacccaggcctggtactgctgccacag
caccctgagtacaagcgcatcacagaccagctggcagcacaacactccagccttcgagac
atccagcattcgcctaaactctcagccctcaaacagttgttgttggactgtggtctggga
agcagtggctcagcggagggcacagaagcggttgtagcccaacacagagtgttgatcttc
tgtcagctgaaaagcatgctggacatcgtggagcacgacctgctcaagctccagctgccc
accgtcacctacctgcgacttgacggcagcgtgcaggcgagcctgcgccacgccatcgtc
tccaggttcaacaatgacccctccattgacgtgctgctgctcaccacgcacgtgggtggt
ctgggtctgaacctgactggtgctgacacggtggtgtttgtggaacacgactggaacccc
atgagagacctacaggccatggaccgcgcccacaggataggacagaaacgcgtggtgaat
gtgtatcgtctgatcactcggggcactctggaagagaagatcatgggcctgcagaagttc
aagatgaacatcgccaatgcggtcatcagccaggagaacgccagcctgcagagtatgggc
accgaccagctcctcaacctcttcaccctggacaaggatgggaaggatgataagggcgag
ttgtcgtcctccggcgggaaagcctccattaagaacgtgctggacggtctgggggacctg
tgggatcagctgcagtatgacacagagtacaacctggatagcttcatgcacacgctccac
tag
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