Oncorhynchus tshawytscha (Chinook salmon): 112252982
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Entry
112252982 CDS
T05605
Name
(RefSeq) brother of CDO
KO
K20020
brother of CDO
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
112252982
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112252982
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
Other
112252982
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
fn3
ig
FN3_DSCAM-DSCAML_C
Ig_VEGFR-1-like_5th
C2-set_2
Pur_ac_phosph_N
V-set
Fn3_ROS1
Ig_4
Ig_5
Fn3_VIN3
Ig_PDGFR_d4
G6B
Motif
Other DBs
NCBI-GeneID:
112252982
NCBI-ProteinID:
XP_042164700
LinkDB
All DBs
Position
LG29:24350437..24400500
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AA seq
1059 aa
AA seq
DB search
MSGTLDWTPWMRKRRARVLCALSAVLLCCLQGGATEEVPVFTEEPLSVVQKLGGSVVLRC
STQPPSANISWRLNGRELVAGAVGELGVVLEPGTLLIPALTNLTLGRYQCVASTNAGALV
SVPANVIAAKLRDFEQDDQQDIEVDEGNTAVIVCHLPESQPKAQVRYSVKQEWLETSKGN
YLIMPSGNLQIANATLDDEGPYKCAAYNPVTQEVKTSTSTDRLRIRRSTSEAAHIIYPPV
SRSIMVTKGQRLVLECVASGIPTPQVTWAKDGQDLRFHNNTRFLLSNLLIDSAGEGDSGT
YACHADNGIGSESAATVMYDVLVFEPPQVTVELQQQEVMWGENARFSCQARGKPTPSVVW
LHNARPLATSPRHRLSARVLRVINVGPQDDGLYQCMAENGVGSSQAAARLVTLPTSNPSR
SGKLKSSLCPLSPDKVLREQVPVKPGATGSMLTLDCSELTGQISVAEAPVILSQPRTVKA
DFYDLTWKPRHDGGSAVVEYIVKYRKIEDPPGEWTSSCISGALHKLTLAKLQPASLYEVE
MSAKNCAGLGQPAMMTFRTGKGRRGPGGQNEPPKTPAVPSPRLSPPEAPDKPTISTATET
SAYVTWIPRGNRGFPIQSFRVEFKKLKGKGGGEWEVAVTNIPPQRLSVEITGLEKGMSYK
FRVLAVNVIGASPPSVPSKAYTVLGGGRPNERPVDGPYITYNEAINETTIILKWTYTAVN
NTPVYGFYIFYRPTDSDNDSDYKKDVVEGDRYWHSISDLQPETAYDIKMQSFNEGGESEF
GNVVILETKARLNQRPSPSETSSQRPEHSGGPVPRPSDLPYLIVGVVLGALVFIIVAFIP
FCLWRAWAKEKEMSDLCFPAVASPVSSCQYTMVPLQGLALVGHCPLDPHLPPPHAVYPPI
ALYTSNGKHHRPTHCLPGLHQEDVQYDMECGTLLAQTMSNGHVPVYHYSNSEPEHHGDGE
DHCFLPEDSTLQLLNTSEQPISSQDLTGNARFYNGDIIKENAINQDPPCSPSPLLSLEEE
NSKATTSAATTPESQDALPLQEVNTLQRETPLVEQGTSD
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaacattagactggactccgtggatgagaaagcgacgggcacgagtgctgtgt
gctctgagtgcagtgctgctgtgctgcctacagggcggcgccactgaggaagtacccgtg
ttcacagaggagcctctgtcggtggtccagaagctagggggaagtgtggttctgaggtgc
agcacccaacccccctcagccaacatcagctggcggctaaacggccgcgagctggttgcc
ggggctgttggggaactgggggtggtactggagcctggcactctgctcatccccgccctc
actaacctcaccctgggcaggtaccagtgtgtggccagcaccaacgcaggggccctggtc
agtgtgccggccaatgtcatcgctgccaagttgcgtgactttgaacaagacgaccagcag
gacattgaggtggatgaggggaacacggctgtgatcgtatgtcacctccctgagagccag
cccaaggcacaggtccgctacagtgtcaaacaggagtggctcgagacctccaaggggaac
tacttgatcatgccatcagggaacctgcagatagccaacgccactctggacgacgagggg
ccttacaagtgtgctgcttacaaccctgtcacacaggaagtcaagacctccacctccact
gaccgcctgcgcatacgccgttcaacatcagaggcggcccatatcatctaccccccagtg
tctcgctccatcatggtcactaagggacagcgtctggttctggaatgtgtggccagcggc
attcccaccccgcaggtcacatgggccaaggacggccaggacctgcgtttccataacaac
acgcgctttctgctcagcaacctgctgattgactcggcgggcgagggcgactcagggacg
tatgcgtgtcacgctgacaacggcatcggatcggagagcgccgctacagtgatgtatgac
gtgctggtgttcgagcctccccaggtgaccgtagagctccagcaacaggaggtgatgtgg
ggggagaacgcacgcttcagctgccaggccaggggtaaacccaccccctctgtcgtatgg
ctccacaacgcccgccccctggccacgtcgccacgccaccgcctgtctgcccgcgtgctg
cgtgtcatcaacgtgggcccacaggacgatggcctgtaccagtgcatggctgagaacggc
gtgggcagctcgcaggccgctgccagactggtcaccttgccaaccagtaacccgtctcgg
tcagggaagctgaagtccagcctgtgtcccctgagcccagacaaggtgctgcgggagcag
gtcccagtgaagcccggggccacggggagcatgctgaccctggactgctctgagctgact
gggcagatctctgtggcagaggcccctgtcatcctcagccagcccaggactgtcaaggcc
gacttctatgatctgacctggaaacctcgccacgatggcggctctgctgtggtggagtac
atcgtcaagtacagaaagattgaggaccctccaggtgagtggaccagcagctgtatatct
ggggctctccacaagctgaccctggccaagctgcagccagccagtctgtacgaggtggag
atgtctgctaagaactgcgctggcctgggacaaccggccatgatgaccttcaggacaggc
aaaggtcgtaggggtccagggggacagaatgagcctcctaaaactcctgcagtaccatca
cctcgcctctctcctcccgaggcccctgataagcccaccatctccacggcgacagagacg
tctgcgtacgtaacgtggatcccgcgcggtaaccgtggtttccccatccagtcattccgg
gtggagtttaagaagctgaaagggaagggagggggggaatgggaggtggctgtcactaat
atccccccccaacgactgtctgtggagatcactggcctggagaaaggcatgtcttataag
ttccgtgtgttggcagtgaatgtgattggcgccagcccccccagtgtcccctctaaggcc
tacacggtgttgggtggcggcaggcccaacgaacgccctgtagacggaccctacatcact
tataatgaagccatcaacgagaccaccatcatcctcaaatggacatacactgccgtcaac
aacacccccgtctacggtttctacatcttctaccggccgacagacagtgacaacgacagt
gactataagaaggacgtggtggagggggaccgctactggcactccatcagtgacctgcag
cctgagacggcctacgacatcaagatgcagagcttcaacgaggggggagagagcgagttt
ggcaacgtggttatcttagaaactaaagctcgtctgaaccagcggccctccccgtcggag
acgtcgtcccagagaccagagcactccggggggcctgtgccccgccccagcgacctcccc
tacctcatagtgggcgtggtcctgggggccctcgtattcatcatcgtagccttcatcccc
ttctgcctgtggagagcctgggccaaagagaaggaaatgtcagacctgtgtttcccagct
gtggcgtcccccgtctcctcctgccagtacaccatggtgcccctgcagggcctggcactg
gtcgggcattgtcccctggacccccacttgcccccaccgcacgctgtctacccacccatc
gcactgtacacctccaacgggaaacaccatcggcccacacactgcctgccaggactacat
caggaggatgtgcagtatgatatggaatgtggcacgctactagcacagaccatgtcaaat
ggacacgtcccagtctaccactactctaacagtgagcctgagcatcatggggacggagaa
gatcactgctttctgcccgaagactccaccctccagctactcaacacctcagaacagcca
atcagcagtcaggacctgacggggaacgcccgtttttacaatggggatatcataaaggag
aatgccatcaatcaagacccaccctgctctccctctcctctgctatcactggaggaggag
aactccaaggcgacaacctcagcagctacaacgccagaatcccaagatgcacttccactc
caggaagtgaacaccctccagagggaaacaccgctggtagaacaagggacgtcagattaa
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