Oncorhynchus tshawytscha (Chinook salmon): 112253044
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Entry
112253044 CDS
T05605
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112253044 (col17a1b)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
112253044
NCBI-ProteinID:
XP_024280677
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All DBs
Position
LG06:72281943..72303947
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AA seq
1477 aa
AA seq
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MASRSGGYDGSSSGNSSPEFTRKDYAGSGATRIGRSQSRESEIRARLQSASPSAGRWTEL
DDVKRLVKGGRSNSVSPTRSSASSTLPVPRKATVEAKIVTQASQSVSGQYETTTLDSGLP
SSYCWTSSTLPISSATGNSSSAYGYHSNTNNMSPGLGSSLLNTTSPSSLSVYGFQNNLAP
MSSSVLTTSGVNAHSGTLTGYGVQKNISNGGGLVSTGVSTSAMSALRSHTDDAYRKDLKY
LVLQKENVPVKRDTEVLTLTKDSGKHFTSSVRSVGGSLSGDSLKKEKMVSSYSETAPVLL
KSESNSYYGSPLVSTKDKATYAEIQKEGDYYSSGGRGGGCCGCEDSCCSWWKWLLGLLLL
SLLLLGLLFGLIALAEDVRNLKSRVAALESTSTAAHASQLSVSKNDIRNPQSGTYMDPGG
AARSDNTLNQDTSLGMGMGTGTGTGIAGHTDNAALQRTIQELLLAEMQSQSFKALLTSSM
KGDRGEPGTKGDAGNHGTKGDNGFPGLPGPPGAIGHPGHEGPKGQKGSQGDHGAEGPQGL
RGREGPGGPRGEPGPSGFGEKGEKGSPGESGSLGPAGPVGPAGPKGSGGAPGTPGTPGQP
GSQGFRGESGLPGPKGERGPAGFQGIKGDHGEKGPRGAAGDPGLSGLPGPAGEKGPKGSA
GTPGIDGDKGQRGDHGPTGLPGIRGPSGPAGDSGLPGTPGLQGPPGIPGNPGQPGAKGEA
GEPGRIINAGGSSSVAIPGPPGSPGAPGQAGPPGLSGPIGPAGLPGQSGPKGERGLKGEM
GIQGLQGEAGISVKTSETVSSSRAERQFSLPAQPGPPGPPGPPGAPGRTGDSRSGLPGPA
GPPGEPGYGRPGPRGEKGESGSFVPNSGTFFSGPPGPPGPSGPKGSPGTPGPRGDQGDSG
QPGLPGSPGRPGGGSERASPYGGTHGPPGPPGTPGIPGPEGRKGEPGIPGSPGLPGSARG
TVAASTGFPGPPGPPGPPGHPGIPGIASAPPDLRQYVNDYLRINARSMSSGLPGPRGLPG
PPGAPGSSGSSSSVEDISSRVIAYLQRSGSGFGGGAQGPPGPPGLPGSSGSGSGSMSVND
LIVMLQRDDVRRYVMGPPGPPGPAGPLARGGSTANYDPQEVATYVFRIMNERGIGGGQPG
PPGATGPPGLPGSFSGVSDISALLQNSQFRAMVGRSAGAPGPPGTPGIPGPPGTPGTPGG
PSYRSSASGGLRIEDVQHYLQSSGYSGPPGPPGPPGPQGPPGSSHGVVSYGDSRNIGNYQ
RESIRTELQAYLSSDSIRHSFIGQPGPPGSQGPRGHKGDPGEPGGVQTNRQSYAQSDPRY
SSDLERRQSDIGRLTEPLDYSNVALRVTDYIKNQGLLQDILSESHQRGGSWESQGLPGPP
GPPGPPGYSRVIGAYGNVTADLMDFFRTHGTIVGPPGNTGPKGDRGYLGPKGDRGEIGRP
GPPGLQGLHGQDGYRGEKGEKGAGEVRVGRRRRSIGV
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcgctcaggaggctacgacggaagctcaagtggcaactcctcccccgagttt
acacggaaagactatgcagggtcaggtgccactagaatcgggaggagccagagcagagag
agtgaaatcagagccagactgcagagtgcctctcccagtgctggcagatggactgagctg
gatgatgtgaagaggctggtgaagggaggacgctccaacagtgtcagccccacccgctcc
tccgcttcctccaccctgcctgtccccaggaaggccaccgtcgaggccaagatcgtcacc
caggcctcccagtcagtctctgggcagtatgagaccactaccctggactctggcctacct
tcttcctactgctggactagctctacgctgcccatctcctctgccactggcaacagcagc
agcgcatacggttaccacagtaacacaaacaacatgtctccaggcttggggtcctccctg
ctcaacaccacctcaccctcctccttgtcagtgtatggattccagaataacttggcgccc
atgtccagtagtgtcctcaccaccagtggagttaacgcacattcaggcactttgacagga
tatggagtgcagaagaacatatcgaatggtggtggtctcgtcagcaccggagtgtcaacc
tctgcaatgtccgctttgaggtctcacactgatgacgcatacaggaaagacttaaagtac
cttgtgctgcagaaggagaatgttccagtcaagagagatactgaggtgctcaccctcaca
aaagacagtggaaaacacttcactagcagtgttcgcagtgttgggggttcactgtctggt
gattctctaaagaaggagaagatggtgtccagctacagtgagactgcaccagtccttctg
aagtctgagtccaattcatactatggatcacccctagtgtcaacaaaagacaaagcaaca
tatgcagagatccaaaaagagggggactactacagcagcggaggacgaggtgggggctgc
tgtgggtgtgaggactcctgctgttcctggtggaagtggctgctaggactgctcctgctc
tccctgctgctcctgggcctgctcttcgggctcattgccctggcggaggacgtgaggaat
ctgaagtctcgagtggcagctctggagtccacctccaccgctgctcatgccagccaactg
tcagtctccaagaacgacatccgcaacccccagtctggcacctacatggaccctgggggc
gcggcccgctccgacaacaccctgaaccaggataccagcctgggcatggggatgggcact
ggcacgggcactggcatcgccgggcacacagacaatgctgccctccagaggaccatccag
gaactactactagctgagatgcagtctcagtccttcaaagcccttcttacctcttcaatg
aaaggggacagaggagagccgggaactaaaggcgatgcagggaatcatggaactaaaggt
gacaatggtttcccaggacttccaggtcctccaggtgccattggtcacccaggacacgaa
ggacccaaaggacaaaaaggaagtcaaggtgaccatggagctgaggggccacaagggctc
aggggccgagaggggcctggagggccaagaggggagccaggaccctcagggtttggagag
aagggggagaaaggttctcctggtgaatcaggatctcttggtcctgctggtccagtcggc
ccggctgggcccaaaggctcagggggtgctccgggtactcctggtacgccaggccaacca
ggatctcaaggcttccgtggagaatcaggactacctggtccgaagggggagaggggtcct
gctggatttcagggaatcaaaggtgaccatggtgagaaaggacctcgtggtgccgcaggt
gacccaggactatcaggcttgccaggaccagccggagagaaaggacccaaaggatctgca
ggaactcctggaattgatggtgacaaaggccaaagaggtgatcacggtcctactgggtta
ccagggatcagaggtccatctgggcctgcaggggactcaggcctaccaggaacacccggg
cttcaagggccaccaggaataccagggaaccctggacaaccaggagccaagggtgaggca
ggagaaccaggaagaatcatcaatgcagggggatccagttctgtggccatccccggcccc
ccaggaagccccggagcacccggtcaagccggacccccagggttatcaggccccattggc
cctgctggtcttcctggccagtctggtcctaaaggtgagagagggctgaagggtgagatg
ggtattcagggactccagggagaggcaggtatctcagtgaaaaccagtgaaaccgtcagc
tcatctagagctgagagacagttcagtcttcctgcacaaccaggtccccctggtccccct
ggaccccctggagcccctggacgtacaggtgactcaagatcaggactcccaggaccagct
ggtcctccaggagagccaggatatggcagacctggtcctagaggagagaaaggagagtca
ggaagctttgtacccaattcaggaacattcttctctggaccccctggacctcccgggcca
tctgggccaaaaggatcacctggtacaccaggaccaagaggagaccaaggagattcaggc
cagcctggtctaccagggagcccaggaagaccaggaggaggctctgaaagagcatcacca
tacggtggaacacatgggccacctgggcccccagggactccagggattcctggaccagag
ggacggaaaggcgaacctggaattcccggttctcctggtcttcctggctctgcaagaggc
actgtggcggccagcacagggttcccaggtcctcctggtccacctggtcctcccggacac
ccaggcattccaggcatagcctctgctcctcctgatctgcgtcagtatgtcaacgactat
ctccgaattaatgctaggagtatgtcctctggtcttcctggcccccgtggcctccctgga
cccccaggagcccctggatcctctggatcctctagttctgtggaggacatatcttctcgt
gtcattgcttatctgcagcgttcaggatcaggcttcggcggtggtgctcagggtcctcca
ggccccccaggacttcctgggtcctctggctctggttctggctcaatgtctgtcaacgac
ctcattgttatgctacagagggatgacgtacggcgatatgtaatgggcccacccggacct
ccaggcccagcaggaccattagccagaggaggcagtacggcaaactacgacccacaggaa
gtggctacctacgtcttcagaatcatgaacgaacgcgggatcggtggtgggcagcctgga
cctccgggtgcaaccgggcctccagggctacctggctccttcagcggtgttagtgacatc
tccgcactcctgcaaaattcacaattccgtgcgatggttgggcgctctgctggagcccct
ggtcctcctggtactccaggtatcccgggacccccaggcacccctggtaccccaggaggg
ccatcttacaggagctcagcctcagggggtttaaggatagaggacgtccagcattaccta
caaagttctgggtacagtggtcctccaggcccacccggccccccaggacctcagggcccc
ccagggagctctcacggagtagtctcctatggagatagtagaaacatcggaaactaccag
cgagaaagcatccgcacagaactccaggcgtacctcagcagtgacagtatacggcactcc
ttcattggccaaccaggtcctcctgggtctcagggtccccgtggtcacaaaggagaccct
ggagaacctggtggggttcagactaaccgtcagagttatgcccagagtgacccacgttac
tcttctgaccttgagcggcgccagagtgacattgggagattgacagagccactagactac
tccaacgttgccttgagagtgacagactacatcaagaaccagggcttactgcaggacatc
ctgtctgagagtcaccagcgaggaggctcctgggagtcccaaggcctcccaggaccccct
gggcctcctggacctcccgggtatagccgtgtcattggagcttacggcaacgtgactgct
gacctcatggacttctttagaacccacggcaccattgttggccccccagggaatactggc
ccgaaaggagacagggggtacctcggacccaaaggagacagaggcgagataggtcgccca
ggccctccaggactgcagggactacatggtcaggatggatacagaggagagaagggagag
aaaggtgcaggtgaagttagggttggtcgtcggcgtcggagcatcggtgtttaa
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