Oncorhynchus tshawytscha (Chinook salmon): 112253050
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Entry
112253050 CDS
T05605
Name
(RefSeq) VPS10 domain-containing receptor SorCS1-like
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112253050
Membrane trafficking [BR:
otw04131
]
Protein recycling
Others
Others
112253050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
112253050
NCBI-ProteinID:
XP_024280687
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All DBs
Position
LG06:complement(72634714..72684497)
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AA seq
1271 aa
AA seq
DB search
METTVGCCPHWLIAMWMCLFTLTSSMDMTKTNIRCIPSSQLSVIKPAPRELSKVGFDPFG
KGPEDEAVGVAEKSPGCHPFKSSCKKANVAEYLARVSGDGEARSSVPESEQPFVNKSYSR
GLEERRLVDSSEVLYQHQSGSGITSKLTDRPMPPPATLNKVTVNNTRHNTINSFGRENRL
KRHELSKKKAGASLRNLSRRRKRSFQTAESKTSWSGFGWNGEDASTPGQHELKLSSSTFA
LTGDSAHNQAMVHWSGQNSSVILMLTKYFDFSLGSVTESSLWRSTDYGTRYEKLDEKVGP
KTILSYLYVSPNNKRKIMLLTDPEVESSLLISFDEGASYQRYHLAFDILSLLFHPEQEDW
ILAYSHDQKLYVSVEFGRRWQLVHDSVVPNRFYWSKLGLDKEPGMIHLETSVSDRRSQYI
TCKLQNCTEANKGRPFPGFISPDSLVVQDQYVFIQVPMGGRPVHYVSYKRNAFFPMKLPK
YTFPKDLQIISTDDNQVVAAVQDWHQNDSYNLYMSEAHGLFFTLALENVVSSGGPEGNVM
IDLYEVAGIKGVFLSNKVVENEVKTFITYNKGRDWRLLHAPTTDLSGTRLYCVQPYCSLH
LHLHVSDNPYTSGNIVSKESAPGIIVASGTIGPELTANNVSIFITSDAGNTWREVFEDEY
SILFLNQGGALVAIRHTPLPIRHIWLSFDEGRHWNKFSFTSSPLYVDGVLGEPGEDTLIM
TIFGHFSHRSEWQLVKIDFRPIFNRRCTTDDYQTWQLHNDGKVCIMGVKRIFQNLKPDAR
CVKTKDQYISQMSDSCPCTEADFECDFGFERQSDGGCTAAFWFVPSSVSRDCTTGDSFLN
TTGYRKALSNNCTAGTLGKYRLRRQRCPHQAPRGLQLVTSEGTLTATLGDNVTLLVFLEE
GDGSTTSITVDFGDGTAISYANISSIEDGVKHTYSKVGIYQVAAMALNSLGSERVLLYLH
VTCTLEQVQLSAPSVVVRNKAVDLSTVLKPRYVGTVTYYWWFNNHTEPVVTLVGGMSFTF
YKEGTHTVTVQVSAGNTVLQDKITVAVYEYFWSHVLAFSSNLDAFNPAVAEWRQDISRVV
KDSMVQVTGINGEQLLVSVLPGLPTAAELFIIPEKRPTEGTMNRKGTHLEQLSQVLLSAL
NQDLIQFTLRPGVQVNVYPTRLSPAPLVDTSESGHNGAAVIMLVSVVFVGLAVFVIFKFK
RKIPGINIYTEERSEKQQEVIPTVASIAVPNPEGDMVTSLEHLDTGPDARGIGYLPSLTD
IKLSDETPHVF
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaaccgtcggttgctgccctcattggctcattgctatgtggatgtgtcttttt
accttaacttccagcatggacatgacaaaaacaaatataaggtgcattccatcaagccaa
ctctctgttatcaagccggctccccgggaactctcgaaagtgggatttgatccatttgga
aagggaccagaggatgaagctgtgggggttgcagagaagtcaccaggttgtcaccccttt
aaaagcagctgtaaaaaagccaatgttgcggaatatttagcgcgcgtctccggtgatggc
gaggcaagaagttcagtccctgaatccgagcaaccgtttgtaaataaatcatacagccgt
ggattagaagaacgtcggctcgtggacagttctgaagtgctctatcaacatcaaagtggc
tcgggcatcacctccaaactcacagataggcctatgccgccacctgccaccctcaataaa
gtaaccgtcaataacactagacataatacaattaatagttttggaagagaaaatagactt
aaacgacatgagttatcaaaaaagaaggctggggcaagtttgaggaacctaagccgtcga
cgaaagcgcagcttccaaaccgcggagagcaaaacatcttggtccggattcggatggaac
ggtgaagatgcgtcaacccccgggcaacatgagttgaaacttagtagttctacattcgca
ctcacgggggattcagctcataaccaagccatggtgcattggtccggccaaaatagcagc
gtgattctaatgctgactaagtactttgacttcagccttggcagtgtcacagagagctct
ctatggaggtcaacagactatggaaccaggtatgagaaacttgatgaaaaggtcgggcca
aaaaccatactgagctacttgtacgtgagtccgaataacaaacgaaagatcatgttactg
accgacccggaggtggagagcagcctgctcattagctttgacgagggcgcatcctatcag
aggtaccacttagccttcgacatcctcagcctcctcttccaccccgagcaggaggactgg
atcctggcttacagccacgaccagaagctctacgtctctgttgaatttggaagaagatgg
cagctcgtacatgacagtgtggtccccaacagattttactggtcaaaactgggtttggac
aaagaaccaggaatgattcacttggagacaagtgtttctgacagacgatcccagtatata
acatgtaagctgcagaactgcacagaggccaacaaaggcaggcctttccctgggtttatc
agcccggattccctggtggttcaggaccagtatgtattcattcaggtaccaatgggtggc
cggcctgtccattatgtgtcatacaaaagaaatgctttcttccccatgaagctgcctaag
tacacatttccaaaggacttgcagataatcagcacagatgataaccaggtggtggcagca
gtgcaggattggcaccagaatgactcctacaacttgtacatgtcagaggcccatggtctc
ttcttcactctggccctggagaacgtagtgagcagtgggggaccagagggcaacgttatg
atagacctctatgaggtagcagggataaaaggggtgttcttgtcaaataaagttgtcgag
aacgaagtgaaaacatttatcacttacaataaggggcgagactggcgtcttctacatgct
cctaccactgatctgagcggtaccagactttactgtgtacagccctattgttcattgcac
ctgcatctccatgtgtctgacaacccatacacgtctggaaacatagtcagcaaagaatca
gctccaggaattatagtagcatcaggtaccattgggcctgagctgaccgccaataatgtc
agcattttcatcacctcagatgctggcaacacttggagagaggtatttgaggacgagtat
agcatcctctttcttaaccagggcggtgccctagtggccattcgacacacacctctcccc
atcagacacatttggttgagttttgatgagggaagacactggaacaaattcagctttacc
tcctctcctctctatgtagacggagtcttaggagagccaggggaggacaccctcatcatg
acaatatttggccatttcagccatcgttctgaatggcagcttgtcaagattgacttcagg
cccatcttcaacagaaggtgcaccacagacgactatcagacctggcagttacacaatgat
ggtaaagtctgcatcatgggagtgaagagaatcttccagaatctgaagcccgacgccaga
tgtgtcaaaaccaaagatcagtacatctcccagatgtcagactcctgtccatgcactgag
gctgactttgagtgtgattttggctttgagaggcagagtgatggaggatgcactgctgcc
ttctggtttgttccatcctccgtgtccagagactgcaccaccggagacagcttcctaaac
actacaggataccgtaaggctctgtccaataactgcactgcgggaacccttgggaagtac
cgtcttaggaggcagaggtgtccccaccaggcccccagaggtctgcagctggtcaccagt
gagggaacactcacagccaccctgggggacaacgtgaccctcctcgtgtttctggaggag
ggtgatggctccacaacaagtataacagtggactttggagacgggacggccatatcctac
gctaacatcagctccatagaggatggggtcaaacatacctacagtaaagtcggcatttac
caagtggctgccatggcactcaacagcctgggctctgagagagtcttactatacctgcat
gttacttgtacacttgagcaagtgcagctttcagctccctctgtggttgttaggaataaa
gcagtggatctatcaacagtcctgaagccacgttatgttggaacagtcacctactactgg
tggttcaacaaccacactgagcctgtcgtgactttagtgggaggaatgtccttcaccttc
tacaaggagggaactcatactgtcaccgtgcaagtgtcagcaggcaacactgtccttcaa
gacaaaataactgttgcagtctatgaatatttctggtcacacgttttagcattctcctct
aatctggacgccttcaatcctgctgtggctgaatggagacaggacatcagtagagtggtc
aaggactccatggtccaagtcacagggatcaatggagagcagcttctggtgtcagtgctt
ccagggttgccaacggcagcagagttgtttatcatcccagagaaaaggccaacagaaggg
acgatgaatagaaaagggacacatttagagcagctttctcaggtcctgctaagtgccctg
aaccaagacctcatccagtttactctgcggcccggggttcaggttaacgtttaccccaca
cgactgtctccagctcctctcgtggacaccagtgagagtgggcacaatggtgctgcagtc
attatgctcgtgtctgtagtatttgtgggtttggcagttttcgttatcttcaagttcaaa
aggaagatccctggtatcaacatatacacagaggagaggtcagagaaacaacaggaagtg
atccctacggtggcgtccatagctgtcccaaatcctgagggagacatggtgacctctttg
gagcacttggacacagggccagatgcacgtggcataggatacctgccatctctcacagac
atcaaactctccgatgaaactccccatgtgttttaa
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